miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16674 5' -50.6 NC_004156.1 + 216648 0.66 0.998796
Target:  5'- cGGUGGCCucuucgcuacuacuACUGUaGuCAUCGUCAuCa -3'
miRNA:   3'- -UCACCGGuu------------UGACA-C-GUAGCAGUuGc -5'
16674 5' -50.6 NC_004156.1 + 45280 0.66 0.998773
Target:  5'- --aGcGCCAAAgUGUGCAUCGUa---- -3'
miRNA:   3'- ucaC-CGGUUUgACACGUAGCAguugc -5'
16674 5' -50.6 NC_004156.1 + 188585 0.66 0.998773
Target:  5'- cGUGGgCAGACUaaGCAucauugcuucaUCGUCGGCa -3'
miRNA:   3'- uCACCgGUUUGAcaCGU-----------AGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 83495 0.66 0.998773
Target:  5'- cAGUGuGCCAAAC---GCAUCGUUGAUc -3'
miRNA:   3'- -UCAC-CGGUUUGacaCGUAGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 184564 0.66 0.998521
Target:  5'- cGUGuaCCAAGC-GUGCAcCGUCAACc -3'
miRNA:   3'- uCACc-GGUUUGaCACGUaGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 99378 0.66 0.998521
Target:  5'- --cGGUCGAGg-GUGC-UCGUCAACa -3'
miRNA:   3'- ucaCCGGUUUgaCACGuAGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 211415 0.66 0.998227
Target:  5'- cGUGGUCuguuucGAUUGUugGCAUUGUUGACGa -3'
miRNA:   3'- uCACCGGu-----UUGACA--CGUAGCAGUUGC- -5'
16674 5' -50.6 NC_004156.1 + 114031 0.66 0.998227
Target:  5'- --aGGaCCAAGCUaaaggGCAUCGUUGACa -3'
miRNA:   3'- ucaCC-GGUUUGAca---CGUAGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 92003 0.66 0.998227
Target:  5'- --aGGCCAAGCguagGCGUCagGUUGACGa -3'
miRNA:   3'- ucaCCGGUUUGaca-CGUAG--CAGUUGC- -5'
16674 5' -50.6 NC_004156.1 + 71363 0.66 0.997885
Target:  5'- --cGGCCAGAUUGgugGCcucAUCGUCcACa -3'
miRNA:   3'- ucaCCGGUUUGACa--CG---UAGCAGuUGc -5'
16674 5' -50.6 NC_004156.1 + 150750 0.66 0.997654
Target:  5'- aGGUGGCCAGAUguacgcccugaccgaUGUGCAgcacaagUGUCcGCc -3'
miRNA:   3'- -UCACCGGUUUG---------------ACACGUa------GCAGuUGc -5'
16674 5' -50.6 NC_004156.1 + 93386 0.67 0.996512
Target:  5'- -cUGGCCAccuGAUUG-GCGcCGUCAAUGa -3'
miRNA:   3'- ucACCGGU---UUGACaCGUaGCAGUUGC- -5'
16674 5' -50.6 NC_004156.1 + 90253 0.67 0.995916
Target:  5'- -aUGGCCaAGAUUGUaGCcUCGUCAguGCGu -3'
miRNA:   3'- ucACCGG-UUUGACA-CGuAGCAGU--UGC- -5'
16674 5' -50.6 NC_004156.1 + 156970 0.68 0.993337
Target:  5'- gGGU-GCCGAuaaacuugcucucuGCgauugGUGCGUCGUCGACc -3'
miRNA:   3'- -UCAcCGGUU--------------UGa----CACGUAGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 140155 0.68 0.992017
Target:  5'- aGGUGGCCAAAgaGuUGCGUCccgugcacaugggcuGUCGucGCGa -3'
miRNA:   3'- -UCACCGGUUUgaC-ACGUAG---------------CAGU--UGC- -5'
16674 5' -50.6 NC_004156.1 + 94157 0.68 0.991572
Target:  5'- cAGUGuuuuGCCAAcCUgGUGCccAUCGUCAACa -3'
miRNA:   3'- -UCAC----CGGUUuGA-CACG--UAGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 152438 0.68 0.991572
Target:  5'- cGUGGCCAucauguACUGuUGCAaCGaCAGCa -3'
miRNA:   3'- uCACCGGUu-----UGAC-ACGUaGCaGUUGc -5'
16674 5' -50.6 NC_004156.1 + 111981 0.68 0.989044
Target:  5'- uGUGGCCAAugUGgaUGCAgUGUUGGCc -3'
miRNA:   3'- uCACCGGUUugAC--ACGUaGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 113976 0.69 0.982254
Target:  5'- gAGUGuGCCAAACa---CAUCGUCAACc -3'
miRNA:   3'- -UCAC-CGGUUUGacacGUAGCAGUUGc -5'
16674 5' -50.6 NC_004156.1 + 138999 0.7 0.975377
Target:  5'- gAGUGGCaucGCgauucgGUGCAUUGUCGAUu -3'
miRNA:   3'- -UCACCGguuUGa-----CACGUAGCAGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.