miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16678 5' -53.1 NC_004156.1 + 111811 0.66 0.991037
Target:  5'- uGUCUgCGGCAaacucaUCGuccagcuugcguuUGACCGCC-UCCu -3'
miRNA:   3'- uCAGA-GCCGU------AGCu------------ACUGGUGGuAGG- -5'
16678 5' -53.1 NC_004156.1 + 123185 0.7 0.931306
Target:  5'- cGUCUgaagcuacacCGGCAUCGuccgagacACCGCCAUCUg -3'
miRNA:   3'- uCAGA----------GCCGUAGCuac-----UGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 127640 0.69 0.945416
Target:  5'- uGGUCUUGGCcacauuGUUGAUGACgACCcgAUUCu -3'
miRNA:   3'- -UCAGAGCCG------UAGCUACUGgUGG--UAGG- -5'
16678 5' -53.1 NC_004156.1 + 127809 0.73 0.839343
Target:  5'- cGUaCUCGGUGUCGGaggguagagugugccGAUCGCCAUCCa -3'
miRNA:   3'- uCA-GAGCCGUAGCUa--------------CUGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 129540 0.67 0.97822
Target:  5'- --aCUCuGCcgUGAUGACCACCAa-- -3'
miRNA:   3'- ucaGAGcCGuaGCUACUGGUGGUagg -5'
16678 5' -53.1 NC_004156.1 + 135824 0.66 0.990319
Target:  5'- uAGcCgUgGGCAUCGGUG-CCACCAg-- -3'
miRNA:   3'- -UCaG-AgCCGUAGCUACuGGUGGUagg -5'
16678 5' -53.1 NC_004156.1 + 140156 0.66 0.990319
Target:  5'- cGUaCUCGGCAccgUGAUGAacaCACCGgacaauacgacUCCg -3'
miRNA:   3'- uCA-GAGCCGUa--GCUACUg--GUGGU-----------AGG- -5'
16678 5' -53.1 NC_004156.1 + 146610 0.66 0.991928
Target:  5'- --aCUUGGCAUCGGagagaagccuaacgaUG-CCACUAUUCg -3'
miRNA:   3'- ucaGAGCCGUAGCU---------------ACuGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 147543 0.66 0.990319
Target:  5'- aGGUC-CGGCGaCGAagaGAUUACCGUCa -3'
miRNA:   3'- -UCAGaGCCGUaGCUa--CUGGUGGUAGg -5'
16678 5' -53.1 NC_004156.1 + 149261 0.67 0.982451
Target:  5'- cAGUCacCGGCAUCGAcgucgcaaagUGACCaaACUAcCCa -3'
miRNA:   3'- -UCAGa-GCCGUAGCU----------ACUGG--UGGUaGG- -5'
16678 5' -53.1 NC_004156.1 + 152902 0.73 0.804818
Target:  5'- --gCUgGGCAUCGGUGA-CACCAugUCCa -3'
miRNA:   3'- ucaGAgCCGUAGCUACUgGUGGU--AGG- -5'
16678 5' -53.1 NC_004156.1 + 164699 0.69 0.957475
Target:  5'- cGUCgccucCGGCAccgCGAgccACCAUCAUCCg -3'
miRNA:   3'- uCAGa----GCCGUa--GCUac-UGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 169311 0.75 0.720885
Target:  5'- cGGUCUCGGCAUCGGUguacGugCACaUGUCg -3'
miRNA:   3'- -UCAGAGCCGUAGCUA----CugGUG-GUAGg -5'
16678 5' -53.1 NC_004156.1 + 169642 0.68 0.973279
Target:  5'- uGGUCUCGcucauaaaacGCAUCGAcUGuuUugCAUCCg -3'
miRNA:   3'- -UCAGAGC----------CGUAGCU-ACugGugGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 175275 0.7 0.915107
Target:  5'- cAGUCUC-GCAcCG-UGACCagACCGUCCu -3'
miRNA:   3'- -UCAGAGcCGUaGCuACUGG--UGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 179886 0.7 0.929781
Target:  5'- uGGUaUCGGCAUCGAUGccgucuuggaucCCACCAagauugaUCCu -3'
miRNA:   3'- -UCAgAGCCGUAGCUACu-----------GGUGGU-------AGG- -5'
16678 5' -53.1 NC_004156.1 + 214161 0.68 0.970525
Target:  5'- cGUCUCGGC-UCGGUGcacgguACgCACCAguacUCUg -3'
miRNA:   3'- uCAGAGCCGuAGCUAC------UG-GUGGU----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.