miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16684 5' -47.1 NC_004156.1 + 1798 0.72 0.987427
Target:  5'- -cCGCUACUAgCAGUGGUAGcAGuUGCg -3'
miRNA:   3'- ucGUGAUGAUgGUCAUCAUCaUC-AUG- -5'
16684 5' -47.1 NC_004156.1 + 135209 0.72 0.988958
Target:  5'- -uUACUACUACUAGUAcuguuacUAGUAGUACu -3'
miRNA:   3'- ucGUGAUGAUGGUCAUc------AUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 141852 0.72 0.991582
Target:  5'- uAGCGCaaagagUGCUACCAGcAGUauuGGUAGUAa -3'
miRNA:   3'- -UCGUG------AUGAUGGUCaUCA---UCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 227054 0.71 0.992695
Target:  5'- uGGCACUugUACUAG-AGUuGUAGcACa -3'
miRNA:   3'- -UCGUGAugAUGGUCaUCAuCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 162165 0.71 0.992695
Target:  5'- -cCACUACUACUAcUAGUGGUAG-ACu -3'
miRNA:   3'- ucGUGAUGAUGGUcAUCAUCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 59075 0.71 0.993687
Target:  5'- uAGCACUGgUACUGGUAGcucUGGUACu -3'
miRNA:   3'- -UCGUGAUgAUGGUCAUCaucAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 118794 0.71 0.994568
Target:  5'- uGGCAUuagUugUACUAGUAGUAGUuucauuGGUAUu -3'
miRNA:   3'- -UCGUG---AugAUGGUCAUCAUCA------UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 176425 0.71 0.994568
Target:  5'- uAGUAgUAgUAgUAGUGGUAGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 55842 0.71 0.994568
Target:  5'- aAGUAUUAUUAUUAGUAGU-GUAGUAa -3'
miRNA:   3'- -UCGUGAUGAUGGUCAUCAuCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 132804 0.71 0.996032
Target:  5'- aGGCAgUAgUAgUAGcAGUAGUAGUGCc -3'
miRNA:   3'- -UCGUgAUgAUgGUCaUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 111583 0.71 0.996032
Target:  5'- cAGUACcACUugCAGUAGcAGU-GUGCa -3'
miRNA:   3'- -UCGUGaUGAugGUCAUCaUCAuCAUG- -5'
16684 5' -47.1 NC_004156.1 + 64602 0.7 0.996632
Target:  5'- uGGUAgUAgUGgUAGUGGUAGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 66689 0.7 0.997156
Target:  5'- uAGUAgUAgUAgUUGGUAGUAGUAGUACg -3'
miRNA:   3'- -UCGUgAUgAU-GGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 142785 0.7 0.997156
Target:  5'- gAGUACUACaUAUCGGgcgaGGUAG-AGUACa -3'
miRNA:   3'- -UCGUGAUG-AUGGUCa---UCAUCaUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 114726 0.7 0.99761
Target:  5'- ---uCUACUGgCAGUGGUugcGGUGGUGCu -3'
miRNA:   3'- ucguGAUGAUgGUCAUCA---UCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 94923 0.7 0.998338
Target:  5'- uAGgAUUACUAgUAGUauuAGUAGUAGUAUu -3'
miRNA:   3'- -UCgUGAUGAUgGUCA---UCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 86376 0.7 0.998338
Target:  5'- uGGCACUucgGgUACCuu--GUAGUAGUACu -3'
miRNA:   3'- -UCGUGA---UgAUGGucauCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 53604 0.7 0.998338
Target:  5'- cGGCuuUUACUGgCAcUGGUGGUGGUGCu -3'
miRNA:   3'- -UCGu-GAUGAUgGUcAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 122808 0.69 0.998626
Target:  5'- uGGCACUgguGCUugcACCGGUGGUuacuGUAG-ACg -3'
miRNA:   3'- -UCGUGA---UGA---UGGUCAUCAu---CAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 185936 0.69 0.99887
Target:  5'- uAGUGCUAgUACCAGUAccAGUgccAGUGCc -3'
miRNA:   3'- -UCGUGAUgAUGGUCAUcaUCA---UCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.