miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16684 5' -47.1 NC_004156.1 + 135246 1.11 0.021769
Target:  5'- uAGCACUACUACCAGUAGUAGUAGUACu -3'
miRNA:   3'- -UCGUGAUGAUGGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 135501 0.89 0.369066
Target:  5'- gAGUACUACUACUAcUGGUAGUAGUGCu -3'
miRNA:   3'- -UCGUGAUGAUGGUcAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 17389 0.79 0.838013
Target:  5'- uAGUugUACUaguuguAUUAGUAGUAGUGGUACu -3'
miRNA:   3'- -UCGugAUGA------UGGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 191332 0.78 0.84653
Target:  5'- cAGUGCcACUACCAGUAGUGGU-GUAa -3'
miRNA:   3'- -UCGUGaUGAUGGUCAUCAUCAuCAUg -5'
16684 5' -47.1 NC_004156.1 + 39668 0.78 0.87076
Target:  5'- cAGCAgUACUACCAcUAGUAGUguugcuGGUACu -3'
miRNA:   3'- -UCGUgAUGAUGGUcAUCAUCA------UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 76182 0.78 0.87076
Target:  5'- uGGUAUUugUACUAGUAgGUAGUAGUAg -3'
miRNA:   3'- -UCGUGAugAUGGUCAU-CAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 25245 0.77 0.906351
Target:  5'- cAGUACUACUACUAGaggauagcguuUAGUAGaGGUGCu -3'
miRNA:   3'- -UCGUGAUGAUGGUC-----------AUCAUCaUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 39923 0.77 0.912705
Target:  5'- cAGCAacACUACUAGUGGUAGUAcUGCu -3'
miRNA:   3'- -UCGUgaUGAUGGUCAUCAUCAUcAUG- -5'
16684 5' -47.1 NC_004156.1 + 123693 0.76 0.918798
Target:  5'- uGCAacgGCUACCAGUGGUGGUAaUAUc -3'
miRNA:   3'- uCGUga-UGAUGGUCAUCAUCAUcAUG- -5'
16684 5' -47.1 NC_004156.1 + 141777 0.76 0.924628
Target:  5'- aGGUAgUAgUGgUAGUGGUGGUAGUGCa -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 116200 0.76 0.924628
Target:  5'- uAGCACUAgUAgCAGUAGUAGUGaaUGCa -3'
miRNA:   3'- -UCGUGAUgAUgGUCAUCAUCAUc-AUG- -5'
16684 5' -47.1 NC_004156.1 + 70058 0.76 0.924628
Target:  5'- -cCACUAUcagUACCAGUGGU-GUGGUGCa -3'
miRNA:   3'- ucGUGAUG---AUGGUCAUCAuCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 156156 0.76 0.930194
Target:  5'- cGCA--ACaACCAGUAGUAGUGGUAg -3'
miRNA:   3'- uCGUgaUGaUGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 135471 0.75 0.945311
Target:  5'- uAGUAgUACUACUAGUaacaguacuAGUAGUAGUAa -3'
miRNA:   3'- -UCGUgAUGAUGGUCA---------UCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 1536 0.75 0.951565
Target:  5'- uAGCGCUagcgcaacugcuaccACUGCUAGUAGcGGUAGUGu -3'
miRNA:   3'- -UCGUGA---------------UGAUGGUCAUCaUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 161912 0.75 0.954092
Target:  5'- aAGU-CUACcACUAGUAGUAGUAGUGg -3'
miRNA:   3'- -UCGuGAUGaUGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 158282 0.74 0.968677
Target:  5'- cAGUACUGgUagcACUAGUAGUAGUAauGUGCa -3'
miRNA:   3'- -UCGUGAUgA---UGGUCAUCAUCAU--CAUG- -5'
16684 5' -47.1 NC_004156.1 + 168119 0.74 0.974574
Target:  5'- uAGUAgUugUAgUAGUAGUAGUGGUAg -3'
miRNA:   3'- -UCGUgAugAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 123143 0.73 0.985737
Target:  5'- cGCuucUUACcggauCCGGUGGUGGUGGUGCg -3'
miRNA:   3'- uCGu--GAUGau---GGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 49296 0.72 0.987427
Target:  5'- gAGUAgUAgUAUgAGUAGUGGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUGgUCAUCAUCAUCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.