miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16684 5' -47.1 NC_004156.1 + 114726 0.7 0.99761
Target:  5'- ---uCUACUGgCAGUGGUugcGGUGGUGCu -3'
miRNA:   3'- ucguGAUGAUgGUCAUCA---UCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 141852 0.72 0.991582
Target:  5'- uAGCGCaaagagUGCUACCAGcAGUauuGGUAGUAa -3'
miRNA:   3'- -UCGUG------AUGAUGGUCaUCA---UCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 227054 0.71 0.992695
Target:  5'- uGGCACUugUACUAG-AGUuGUAGcACa -3'
miRNA:   3'- -UCGUGAugAUGGUCaUCAuCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 176425 0.71 0.994568
Target:  5'- uAGUAgUAgUAgUAGUGGUAGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 55842 0.71 0.994568
Target:  5'- aAGUAUUAUUAUUAGUAGU-GUAGUAa -3'
miRNA:   3'- -UCGUGAUGAUGGUCAUCAuCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 111583 0.71 0.996032
Target:  5'- cAGUACcACUugCAGUAGcAGU-GUGCa -3'
miRNA:   3'- -UCGUGaUGAugGUCAUCaUCAuCAUG- -5'
16684 5' -47.1 NC_004156.1 + 64602 0.7 0.996632
Target:  5'- uGGUAgUAgUGgUAGUGGUAGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 66689 0.7 0.997156
Target:  5'- uAGUAgUAgUAgUUGGUAGUAGUAGUACg -3'
miRNA:   3'- -UCGUgAUgAU-GGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 142785 0.7 0.997156
Target:  5'- gAGUACUACaUAUCGGgcgaGGUAG-AGUACa -3'
miRNA:   3'- -UCGUGAUG-AUGGUCa---UCAUCaUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 135209 0.72 0.988958
Target:  5'- -uUACUACUACUAGUAcuguuacUAGUAGUACu -3'
miRNA:   3'- ucGUGAUGAUGGUCAUc------AUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 49296 0.72 0.987427
Target:  5'- gAGUAgUAgUAUgAGUAGUGGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUGgUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 123143 0.73 0.985737
Target:  5'- cGCuucUUACcggauCCGGUGGUGGUGGUGCg -3'
miRNA:   3'- uCGu--GAUGau---GGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 17389 0.79 0.838013
Target:  5'- uAGUugUACUaguuguAUUAGUAGUAGUGGUACu -3'
miRNA:   3'- -UCGugAUGA------UGGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 39668 0.78 0.87076
Target:  5'- cAGCAgUACUACCAcUAGUAGUguugcuGGUACu -3'
miRNA:   3'- -UCGUgAUGAUGGUcAUCAUCA------UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 70058 0.76 0.924628
Target:  5'- -cCACUAUcagUACCAGUGGU-GUGGUGCa -3'
miRNA:   3'- ucGUGAUG---AUGGUCAUCAuCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 141777 0.76 0.924628
Target:  5'- aGGUAgUAgUGgUAGUGGUGGUAGUGCa -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 156156 0.76 0.930194
Target:  5'- cGCA--ACaACCAGUAGUAGUGGUAg -3'
miRNA:   3'- uCGUgaUGaUGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 1536 0.75 0.951565
Target:  5'- uAGCGCUagcgcaacugcuaccACUGCUAGUAGcGGUAGUGu -3'
miRNA:   3'- -UCGUGA---------------UGAUGGUCAUCaUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 161912 0.75 0.954092
Target:  5'- aAGU-CUACcACUAGUAGUAGUAGUGg -3'
miRNA:   3'- -UCGuGAUGaUGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 158282 0.74 0.968677
Target:  5'- cAGUACUGgUagcACUAGUAGUAGUAauGUGCa -3'
miRNA:   3'- -UCGUGAUgA---UGGUCAUCAUCAU--CAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.