miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16684 5' -47.1 NC_004156.1 + 135501 0.89 0.369066
Target:  5'- gAGUACUACUACUAcUGGUAGUAGUGCu -3'
miRNA:   3'- -UCGUGAUGAUGGUcAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 158091 0.67 0.999811
Target:  5'- cAGCACUAUgACCGGUacauuAGUaacGGUccGGUACu -3'
miRNA:   3'- -UCGUGAUGaUGGUCA-----UCA---UCA--UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 199289 0.67 0.999914
Target:  5'- cAGCAaacggACgcAUCGGUGGUGGUGGUGu -3'
miRNA:   3'- -UCGUga---UGa-UGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 114971 0.66 0.999963
Target:  5'- cGCAaccACUGCCAGUAGaauGUauuucaGGUACg -3'
miRNA:   3'- uCGUga-UGAUGGUCAUCau-CA------UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 39923 0.77 0.912705
Target:  5'- cAGCAacACUACUAGUGGUAGUAcUGCu -3'
miRNA:   3'- -UCGUgaUGAUGGUCAUCAUCAUcAUG- -5'
16684 5' -47.1 NC_004156.1 + 123693 0.76 0.918798
Target:  5'- uGCAacgGCUACCAGUGGUGGUAaUAUc -3'
miRNA:   3'- uCGUga-UGAUGGUCAUCAUCAUcAUG- -5'
16684 5' -47.1 NC_004156.1 + 135471 0.75 0.945311
Target:  5'- uAGUAgUACUACUAGUaacaguacuAGUAGUAGUAa -3'
miRNA:   3'- -UCGUgAUGAUGGUCA---------UCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 168119 0.74 0.974574
Target:  5'- uAGUAgUugUAgUAGUAGUAGUGGUAg -3'
miRNA:   3'- -UCGUgAugAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 59075 0.71 0.993687
Target:  5'- uAGCACUGgUACUGGUAGcucUGGUACu -3'
miRNA:   3'- -UCGUGAUgAUGGUCAUCaucAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 206639 0.68 0.999758
Target:  5'- uAGguUUAgUAgCAGUAGUAGUAG-ACu -3'
miRNA:   3'- -UCguGAUgAUgGUCAUCAUCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 132804 0.71 0.996032
Target:  5'- aGGCAgUAgUAgUAGcAGUAGUAGUGCc -3'
miRNA:   3'- -UCGUgAUgAUgGUCaUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 162165 0.71 0.992695
Target:  5'- -cCACUACUACUAcUAGUGGUAG-ACu -3'
miRNA:   3'- ucGUGAUGAUGGUcAUCAUCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 191332 0.78 0.84653
Target:  5'- cAGUGCcACUACCAGUAGUGGU-GUAa -3'
miRNA:   3'- -UCGUGaUGAUGGUCAUCAUCAuCAUg -5'
16684 5' -47.1 NC_004156.1 + 86376 0.7 0.998338
Target:  5'- uGGCACUucgGgUACCuu--GUAGUAGUACu -3'
miRNA:   3'- -UCGUGA---UgAUGGucauCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 76182 0.78 0.87076
Target:  5'- uGGUAUUugUACUAGUAgGUAGUAGUAg -3'
miRNA:   3'- -UCGUGAugAUGGUCAU-CAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 1798 0.72 0.987427
Target:  5'- -cCGCUACUAgCAGUGGUAGcAGuUGCg -3'
miRNA:   3'- ucGUGAUGAUgGUCAUCAUCaUC-AUG- -5'
16684 5' -47.1 NC_004156.1 + 53604 0.7 0.998338
Target:  5'- cGGCuuUUACUGgCAcUGGUGGUGGUGCu -3'
miRNA:   3'- -UCGu-GAUGAUgGUcAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 173765 0.67 0.999868
Target:  5'- aGGCACUugUcaucggaacucgaguACCAuuugcuGUGGUAGUagAGUACc -3'
miRNA:   3'- -UCGUGAugA---------------UGGU------CAUCAUCA--UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 25245 0.77 0.906351
Target:  5'- cAGUACUACUACUAGaggauagcguuUAGUAGaGGUGCu -3'
miRNA:   3'- -UCGUGAUGAUGGUC-----------AUCAUCaUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 116200 0.76 0.924628
Target:  5'- uAGCACUAgUAgCAGUAGUAGUGaaUGCa -3'
miRNA:   3'- -UCGUGAUgAUgGUCAUCAUCAUc-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.