miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16684 5' -47.1 NC_004156.1 + 1536 0.75 0.951565
Target:  5'- uAGCGCUagcgcaacugcuaccACUGCUAGUAGcGGUAGUGu -3'
miRNA:   3'- -UCGUGA---------------UGAUGGUCAUCaUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 1798 0.72 0.987427
Target:  5'- -cCGCUACUAgCAGUGGUAGcAGuUGCg -3'
miRNA:   3'- ucGUGAUGAUgGUCAUCAUCaUC-AUG- -5'
16684 5' -47.1 NC_004156.1 + 4536 0.68 0.999758
Target:  5'- aGGgAUguagGCUACCAuUAGaUGGUAGUGCu -3'
miRNA:   3'- -UCgUGa---UGAUGGUcAUC-AUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 7065 0.66 0.999973
Target:  5'- uAGUAgUAUUAUUAGUAGUGuUAGUAUu -3'
miRNA:   3'- -UCGUgAUGAUGGUCAUCAUcAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 17389 0.79 0.838013
Target:  5'- uAGUugUACUaguuguAUUAGUAGUAGUGGUACu -3'
miRNA:   3'- -UCGugAUGA------UGGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 24978 0.67 0.999887
Target:  5'- cAGCACcucUACUAaacgcuauCCucUAGUAGUAGUACu -3'
miRNA:   3'- -UCGUG---AUGAU--------GGucAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 25245 0.77 0.906351
Target:  5'- cAGUACUACUACUAGaggauagcguuUAGUAGaGGUGCu -3'
miRNA:   3'- -UCGUGAUGAUGGUC-----------AUCAUCaUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 29223 0.66 0.999945
Target:  5'- uGCGCUGUUGCCAuGgaaauugaugcuGUGGUGGUGCu -3'
miRNA:   3'- uCGUGAUGAUGGU-Cau----------CAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 39668 0.78 0.87076
Target:  5'- cAGCAgUACUACCAcUAGUAGUguugcuGGUACu -3'
miRNA:   3'- -UCGUgAUGAUGGUcAUCAUCA------UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 39923 0.77 0.912705
Target:  5'- cAGCAacACUACUAGUGGUAGUAcUGCu -3'
miRNA:   3'- -UCGUgaUGAUGGUCAUCAUCAUcAUG- -5'
16684 5' -47.1 NC_004156.1 + 46116 0.66 0.999963
Target:  5'- uGGCcUUACUGCCcuuUGGU-GUAGUGCa -3'
miRNA:   3'- -UCGuGAUGAUGGuc-AUCAuCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 47561 0.68 0.999758
Target:  5'- aAGUAgUGgUGCCuGUauugaaAGUAGUGGUGCc -3'
miRNA:   3'- -UCGUgAUgAUGGuCA------UCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 49263 0.67 0.999935
Target:  5'- gAGgAUUACcgugaUGCUgAGUAGUAGUAGUAUn -3'
miRNA:   3'- -UCgUGAUG-----AUGG-UCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 49296 0.72 0.987427
Target:  5'- gAGUAgUAgUAUgAGUAGUGGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUGgUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 53604 0.7 0.998338
Target:  5'- cGGCuuUUACUGgCAcUGGUGGUGGUGCu -3'
miRNA:   3'- -UCGu-GAUGAUgGUcAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 55408 0.66 0.999973
Target:  5'- -aUACUACUACauGUAG-GGUGGUGCa -3'
miRNA:   3'- ucGUGAUGAUGguCAUCaUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 55601 0.66 0.999963
Target:  5'- uGGCuaGCUGCUGCCGGcauGUAG-AGcUACu -3'
miRNA:   3'- -UCG--UGAUGAUGGUCau-CAUCaUC-AUG- -5'
16684 5' -47.1 NC_004156.1 + 55842 0.71 0.994568
Target:  5'- aAGUAUUAUUAUUAGUAGU-GUAGUAa -3'
miRNA:   3'- -UCGUGAUGAUGGUCAUCAuCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 59075 0.71 0.993687
Target:  5'- uAGCACUGgUACUGGUAGcucUGGUACu -3'
miRNA:   3'- -UCGUGAUgAUGGUCAUCaucAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 64602 0.7 0.996632
Target:  5'- uGGUAgUAgUGgUAGUGGUAGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.