miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16684 5' -47.1 NC_004156.1 + 227054 0.71 0.992695
Target:  5'- uGGCACUugUACUAG-AGUuGUAGcACa -3'
miRNA:   3'- -UCGUGAugAUGGUCaUCAuCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 224912 0.67 0.999914
Target:  5'- uGUAgUGUUAgUAGUGGUAGUAGUAUu -3'
miRNA:   3'- uCGUgAUGAUgGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 206639 0.68 0.999758
Target:  5'- uAGguUUAgUAgCAGUAGUAGUAG-ACu -3'
miRNA:   3'- -UCguGAUgAUgGUCAUCAUCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 206011 0.67 0.999853
Target:  5'- uGGCACUGCUcgauGCCGGUA-UAGauuuUAGUAa -3'
miRNA:   3'- -UCGUGAUGA----UGGUCAUcAUC----AUCAUg -5'
16684 5' -47.1 NC_004156.1 + 199289 0.67 0.999914
Target:  5'- cAGCAaacggACgcAUCGGUGGUGGUGGUGu -3'
miRNA:   3'- -UCGUga---UGa-UGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 191332 0.78 0.84653
Target:  5'- cAGUGCcACUACCAGUAGUGGU-GUAa -3'
miRNA:   3'- -UCGUGaUGAUGGUCAUCAUCAuCAUg -5'
16684 5' -47.1 NC_004156.1 + 185936 0.69 0.99887
Target:  5'- uAGUGCUAgUACCAGUAccAGUgccAGUGCc -3'
miRNA:   3'- -UCGUGAUgAUGGUCAUcaUCA---UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 176425 0.71 0.994568
Target:  5'- uAGUAgUAgUAgUAGUGGUAGUAGUAg -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 173765 0.67 0.999868
Target:  5'- aGGCACUugUcaucggaacucgaguACCAuuugcuGUGGUAGUagAGUACc -3'
miRNA:   3'- -UCGUGAugA---------------UGGU------CAUCAUCA--UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 171342 0.66 0.999963
Target:  5'- gAGCcacuGCUACUGCCAGUGuuguaagcGUuGUAGcUACc -3'
miRNA:   3'- -UCG----UGAUGAUGGUCAU--------CAuCAUC-AUG- -5'
16684 5' -47.1 NC_004156.1 + 168119 0.74 0.974574
Target:  5'- uAGUAgUugUAgUAGUAGUAGUGGUAg -3'
miRNA:   3'- -UCGUgAugAUgGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 162165 0.71 0.992695
Target:  5'- -cCACUACUACUAcUAGUGGUAG-ACu -3'
miRNA:   3'- ucGUGAUGAUGGUcAUCAUCAUCaUG- -5'
16684 5' -47.1 NC_004156.1 + 161912 0.75 0.954092
Target:  5'- aAGU-CUACcACUAGUAGUAGUAGUGg -3'
miRNA:   3'- -UCGuGAUGaUGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 158282 0.74 0.968677
Target:  5'- cAGUACUGgUagcACUAGUAGUAGUAauGUGCa -3'
miRNA:   3'- -UCGUGAUgA---UGGUCAUCAUCAU--CAUG- -5'
16684 5' -47.1 NC_004156.1 + 158091 0.67 0.999811
Target:  5'- cAGCACUAUgACCGGUacauuAGUaacGGUccGGUACu -3'
miRNA:   3'- -UCGUGAUGaUGGUCA-----UCA---UCA--UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 156156 0.76 0.930194
Target:  5'- cGCA--ACaACCAGUAGUAGUGGUAg -3'
miRNA:   3'- uCGUgaUGaUGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 145438 0.66 0.999963
Target:  5'- aGGUugUugUugU--UGGUGGUGGUGCu -3'
miRNA:   3'- -UCGugAugAugGucAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 142785 0.7 0.997156
Target:  5'- gAGUACUACaUAUCGGgcgaGGUAG-AGUACa -3'
miRNA:   3'- -UCGUGAUG-AUGGUCa---UCAUCaUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 141852 0.72 0.991582
Target:  5'- uAGCGCaaagagUGCUACCAGcAGUauuGGUAGUAa -3'
miRNA:   3'- -UCGUG------AUGAUGGUCaUCA---UCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 141777 0.76 0.924628
Target:  5'- aGGUAgUAgUGgUAGUGGUGGUAGUGCa -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUCAUCAUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.