miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16687 5' -53.2 NC_004156.1 + 86492 0.66 0.989753
Target:  5'- uUCAgGCGuCACCACUGgaaACgUUACCGUc -3'
miRNA:   3'- -AGUaCGU-GUGGUGAUg--UGgAGUGGCA- -5'
16687 5' -53.2 NC_004156.1 + 208201 0.66 0.989753
Target:  5'- -aAUGCACACCGCUAgagGCCUacauuaUAUCGUc -3'
miRNA:   3'- agUACGUGUGGUGAUg--UGGA------GUGGCA- -5'
16687 5' -53.2 NC_004156.1 + 183874 0.66 0.988383
Target:  5'- aCA-GCACACUACcgauCGCCaCACCGg -3'
miRNA:   3'- aGUaCGUGUGGUGau--GUGGaGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 218335 0.66 0.988383
Target:  5'- aCAUGCACucGCCGCUACggaucgaaGCCagGCCc- -3'
miRNA:   3'- aGUACGUG--UGGUGAUG--------UGGagUGGca -5'
16687 5' -53.2 NC_004156.1 + 213872 0.66 0.985221
Target:  5'- -uGUGCACaAUgACUGCACCguauCCGUa -3'
miRNA:   3'- agUACGUG-UGgUGAUGUGGagu-GGCA- -5'
16687 5' -53.2 NC_004156.1 + 143314 0.66 0.985221
Target:  5'- -gGUGCACACCAguUUACACUUgaaGCCa- -3'
miRNA:   3'- agUACGUGUGGU--GAUGUGGAg--UGGca -5'
16687 5' -53.2 NC_004156.1 + 60011 0.66 0.983413
Target:  5'- ---cGCAUGCCuCUAUACCUaCACCa- -3'
miRNA:   3'- aguaCGUGUGGuGAUGUGGA-GUGGca -5'
16687 5' -53.2 NC_004156.1 + 114320 0.67 0.981441
Target:  5'- ---cGCACACCACc-CACUUUgACCGUg -3'
miRNA:   3'- aguaCGUGUGGUGauGUGGAG-UGGCA- -5'
16687 5' -53.2 NC_004156.1 + 138124 0.67 0.981441
Target:  5'- -uGUGCACGCCGCguuugaUGCAaauCUUUACCGa -3'
miRNA:   3'- agUACGUGUGGUG------AUGU---GGAGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 213399 0.67 0.97793
Target:  5'- -gAUGCACACUcugaacgacaccgguACUcGCACUUUACCGa -3'
miRNA:   3'- agUACGUGUGG---------------UGA-UGUGGAGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 72202 0.68 0.96888
Target:  5'- cCAUGCaACACUuCUACACCgUUGCCa- -3'
miRNA:   3'- aGUACG-UGUGGuGAUGUGG-AGUGGca -5'
16687 5' -53.2 NC_004156.1 + 111838 0.68 0.965777
Target:  5'- -uGUGCACACUGCUACugCaagugguacugUCugCGg -3'
miRNA:   3'- agUACGUGUGGUGAUGugG-----------AGugGCa -5'
16687 5' -53.2 NC_004156.1 + 205353 0.68 0.962462
Target:  5'- uUCGUGCcucCAUCugUGCACCcgugUACCGa -3'
miRNA:   3'- -AGUACGu--GUGGugAUGUGGa---GUGGCa -5'
16687 5' -53.2 NC_004156.1 + 91620 0.68 0.958931
Target:  5'- gUC-UGCGgACgACUGCGCCUaACCGg -3'
miRNA:   3'- -AGuACGUgUGgUGAUGUGGAgUGGCa -5'
16687 5' -53.2 NC_004156.1 + 55427 0.68 0.955178
Target:  5'- -gGUGCACA-CACUGCAaaaCUC-CCGUa -3'
miRNA:   3'- agUACGUGUgGUGAUGUg--GAGuGGCA- -5'
16687 5' -53.2 NC_004156.1 + 165239 0.68 0.955178
Target:  5'- aCA-GCGCAUCgucgACUACGCCUCGCUu- -3'
miRNA:   3'- aGUaCGUGUGG----UGAUGUGGAGUGGca -5'
16687 5' -53.2 NC_004156.1 + 134124 0.68 0.955178
Target:  5'- gCAUGCACGCaAgUGCACCgaCACCa- -3'
miRNA:   3'- aGUACGUGUGgUgAUGUGGa-GUGGca -5'
16687 5' -53.2 NC_004156.1 + 201963 0.68 0.951199
Target:  5'- gUCGUGCAagACCACcgACACCggagCGCUGc -3'
miRNA:   3'- -AGUACGUg-UGGUGa-UGUGGa---GUGGCa -5'
16687 5' -53.2 NC_004156.1 + 124607 0.68 0.951199
Target:  5'- -gGUGCAaauguCGCCGCUAC-CC-CACCGa -3'
miRNA:   3'- agUACGU-----GUGGUGAUGuGGaGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 26064 0.69 0.94699
Target:  5'- aCGUGCACACCuACUAgAuuCUUCugCGg -3'
miRNA:   3'- aGUACGUGUGG-UGAUgU--GGAGugGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.