Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16700 | 3' | -54.5 | NC_004156.1 | + | 154047 | 0.67 | 0.957986 |
Target: 5'- uCAaACCAuUGUAGAUUCGGACGAUGcCa -3' miRNA: 3'- -GUcUGGU-GCGUCUGAGUCUGCUGCuG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 131659 | 0.67 | 0.961517 |
Target: 5'- gAGACggggACGgAGACUUGGACGGUGACg -3' miRNA: 3'- gUCUGg---UGCgUCUGAGUCUGCUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 86910 | 0.66 | 0.980629 |
Target: 5'- uCAGACCuCaCAGAUUCAGAUGuuGAa -3' miRNA: 3'- -GUCUGGuGcGUCUGAGUCUGCugCUg -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 171320 | 0.66 | 0.982633 |
Target: 5'- gAGugUagagACGCAGACUUAuACGcGCGACu -3' miRNA: 3'- gUCugG----UGCGUCUGAGUcUGC-UGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 175755 | 0.66 | 0.982633 |
Target: 5'- uCAGugCAgGCAGA---GGACGugGAa -3' miRNA: 3'- -GUCugGUgCGUCUgagUCUGCugCUg -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 211179 | 1.11 | 0.005013 |
Target: 5'- aCAGACCACGCAGACUCAGACGACGACg -3' miRNA: 3'- -GUCUGGUGCGUCUGAGUCUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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