Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16700 | 3' | -54.5 | NC_004156.1 | + | 1644 | 0.7 | 0.878046 |
Target: 5'- uCAGGCCAagucUGCAG-CUCAGGauGCGACu -3' miRNA: 3'- -GUCUGGU----GCGUCuGAGUCUgcUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 7566 | 0.71 | 0.824109 |
Target: 5'- aCAGACCAauacUGUAGAaccauuaCAGACGGCGAUg -3' miRNA: 3'- -GUCUGGU----GCGUCUga-----GUCUGCUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 19532 | 0.66 | 0.970863 |
Target: 5'- gAGGCCAUGgcCAGACUCuuggucaguAGACGcCGAUc -3' miRNA: 3'- gUCUGGUGC--GUCUGAG---------UCUGCuGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 40138 | 0.69 | 0.916161 |
Target: 5'- gAGACCACuCAGcaaACUguaCAGACuGACGACg -3' miRNA: 3'- gUCUGGUGcGUC---UGA---GUCUG-CUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 41057 | 0.67 | 0.964836 |
Target: 5'- --uGCCAacucUGCAGACgCAGACuGACGAUg -3' miRNA: 3'- gucUGGU----GCGUCUGaGUCUG-CUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 86910 | 0.66 | 0.980629 |
Target: 5'- uCAGACCuCaCAGAUUCAGAUGuuGAa -3' miRNA: 3'- -GUCUGGuGcGUCUGAGUCUGCugCUg -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 92004 | 0.67 | 0.954239 |
Target: 5'- gAGGCCaaGCGUAGGCgUCAgguuGACGAUGAg -3' miRNA: 3'- gUCUGG--UGCGUCUG-AGU----CUGCUGCUg -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 93548 | 0.68 | 0.946085 |
Target: 5'- aGGAaCACGUcaaacauuAGACUCAGACuGCGAUg -3' miRNA: 3'- gUCUgGUGCG--------UCUGAGUCUGcUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 99575 | 0.66 | 0.982633 |
Target: 5'- aCAGAUCGaauccgGCAGACUCuucgguagAGugGAuCGGCa -3' miRNA: 3'- -GUCUGGUg-----CGUCUGAG--------UCugCU-GCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 122915 | 0.72 | 0.771259 |
Target: 5'- uCAGAUgGCGguGuCUCGGACGAUGcCg -3' miRNA: 3'- -GUCUGgUGCguCuGAGUCUGCUGCuG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 130922 | 0.66 | 0.97611 |
Target: 5'- uGGACUGuugaGCAuGCUCAGcgucuGCGACGACg -3' miRNA: 3'- gUCUGGUg---CGUcUGAGUC-----UGCUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 131659 | 0.67 | 0.961517 |
Target: 5'- gAGACggggACGgAGACUUGGACGGUGACg -3' miRNA: 3'- gUCUGg---UGCgUCUGAGUCUGCUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 150421 | 0.68 | 0.951886 |
Target: 5'- aGGACgAUGCuAGAUUCAGcauucuaaacauguuGCGugGACa -3' miRNA: 3'- gUCUGgUGCG-UCUGAGUC---------------UGCugCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 150502 | 0.73 | 0.752596 |
Target: 5'- aGGGCUACGCAGugUUGGACGuaaaggaggGCGAa -3' miRNA: 3'- gUCUGGUGCGUCugAGUCUGC---------UGCUg -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 154047 | 0.67 | 0.957986 |
Target: 5'- uCAaACCAuUGUAGAUUCGGACGAUGcCa -3' miRNA: 3'- -GUcUGGU-GCGUCUGAGUCUGCUGCuG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 164829 | 0.69 | 0.898105 |
Target: 5'- aUAGuuUACGCAGAggCAGuGCGGCGACa -3' miRNA: 3'- -GUCugGUGCGUCUgaGUC-UGCUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 169902 | 0.66 | 0.978457 |
Target: 5'- -cGACUACcUGGACUCGGACGuuauCGAa -3' miRNA: 3'- guCUGGUGcGUCUGAGUCUGCu---GCUg -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 171320 | 0.66 | 0.982633 |
Target: 5'- gAGugUagagACGCAGACUUAuACGcGCGACu -3' miRNA: 3'- gUCugG----UGCGUCUGAGUcUGC-UGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 172816 | 0.73 | 0.743106 |
Target: 5'- aAGACgAUGgAGACUaugaAGACGAUGACg -3' miRNA: 3'- gUCUGgUGCgUCUGAg---UCUGCUGCUG- -5' |
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16700 | 3' | -54.5 | NC_004156.1 | + | 175755 | 0.66 | 0.982633 |
Target: 5'- uCAGugCAgGCAGA---GGACGugGAa -3' miRNA: 3'- -GUCugGUgCGUCUgagUCUGCugCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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