miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16701 3' -49.1 NC_004156.1 + 42240 0.65 0.999883
Target:  5'- aUGCUCUUGaACAcuaucGCACCGaguacgaGCUCgUUCu -3'
miRNA:   3'- gGCGAGAACaUGU-----UGUGGC-------UGAG-AAG- -5'
16701 3' -49.1 NC_004156.1 + 213988 0.66 0.999761
Target:  5'- uUCGUUUaUGgcCGACACCGAgUCUg- -3'
miRNA:   3'- -GGCGAGaACauGUUGUGGCUgAGAag -5'
16701 3' -49.1 NC_004156.1 + 226541 0.66 0.999698
Target:  5'- aUGCUCUUGUGgAACgagaugcagGCCGACa-UUCa -3'
miRNA:   3'- gGCGAGAACAUgUUG---------UGGCUGagAAG- -5'
16701 3' -49.1 NC_004156.1 + 45058 0.67 0.999281
Target:  5'- aCGCUuuacgCUUGUGC-ACACCGAUggcgUCa -3'
miRNA:   3'- gGCGA-----GAACAUGuUGUGGCUGaga-AG- -5'
16701 3' -49.1 NC_004156.1 + 18274 0.67 0.999138
Target:  5'- gCCGCUCUgacguugacuuucaaGUGCGACGCCaagaauggauACUUUUCg -3'
miRNA:   3'- -GGCGAGAa--------------CAUGUUGUGGc---------UGAGAAG- -5'
16701 3' -49.1 NC_004156.1 + 99736 0.67 0.999121
Target:  5'- gUCGCg---GUccACGACACCGGCUCcgacgUCg -3'
miRNA:   3'- -GGCGagaaCA--UGUUGUGGCUGAGa----AG- -5'
16701 3' -49.1 NC_004156.1 + 44440 0.67 0.999121
Target:  5'- -aGCUC-UGUGCAcagcaccucaaGCACCGGCaUCUg- -3'
miRNA:   3'- ggCGAGaACAUGU-----------UGUGGCUG-AGAag -5'
16701 3' -49.1 NC_004156.1 + 36491 0.68 0.99893
Target:  5'- cUCGCUCUgguuggGUGCAaagguguaaaACACCGACa---- -3'
miRNA:   3'- -GGCGAGAa-----CAUGU----------UGUGGCUGagaag -5'
16701 3' -49.1 NC_004156.1 + 7776 0.68 0.99893
Target:  5'- cCCGCUCUUGU----CACCGAUgCUg- -3'
miRNA:   3'- -GGCGAGAACAuguuGUGGCUGaGAag -5'
16701 3' -49.1 NC_004156.1 + 178419 0.69 0.997362
Target:  5'- -gGCUCUUGUGCcAgACCG-CUCagUUCa -3'
miRNA:   3'- ggCGAGAACAUGuUgUGGCuGAG--AAG- -5'
16701 3' -49.1 NC_004156.1 + 137271 0.69 0.997362
Target:  5'- aCCGCUaCUaUGUACAuucgACGCCuACUCUg- -3'
miRNA:   3'- -GGCGA-GA-ACAUGU----UGUGGcUGAGAag -5'
16701 3' -49.1 NC_004156.1 + 15799 0.69 0.997362
Target:  5'- uUGUUCUUGUACG-CACUGACcgcCUUUa -3'
miRNA:   3'- gGCGAGAACAUGUuGUGGCUGa--GAAG- -5'
16701 3' -49.1 NC_004156.1 + 223293 0.69 0.996887
Target:  5'- uCgGCUgUUGUucguCAGaguCCGACUCUUCu -3'
miRNA:   3'- -GgCGAgAACAu---GUUgu-GGCUGAGAAG- -5'
16701 3' -49.1 NC_004156.1 + 107192 0.69 0.996343
Target:  5'- gCGCUCUUGUcuccgGGCACUGugUUUUUg -3'
miRNA:   3'- gGCGAGAACAug---UUGUGGCugAGAAG- -5'
16701 3' -49.1 NC_004156.1 + 209174 0.7 0.99122
Target:  5'- aCCGaCUCUgguucugGUACuGAUACUGACUCUg- -3'
miRNA:   3'- -GGC-GAGAa------CAUG-UUGUGGCUGAGAag -5'
16701 3' -49.1 NC_004156.1 + 46030 0.7 0.99122
Target:  5'- aCUGCUCaacuUUGUGuuCAACcuagGCCGACUCUUg -3'
miRNA:   3'- -GGCGAG----AACAU--GUUG----UGGCUGAGAAg -5'
16701 3' -49.1 NC_004156.1 + 138197 0.7 0.989981
Target:  5'- aCCGCUCUUGgcCGGCACCauAUUCa-- -3'
miRNA:   3'- -GGCGAGAACauGUUGUGGc-UGAGaag -5'
16701 3' -49.1 NC_004156.1 + 133048 0.71 0.988608
Target:  5'- aUGCUCUgGUugAACAUCGAgUCUa- -3'
miRNA:   3'- gGCGAGAaCAugUUGUGGCUgAGAag -5'
16701 3' -49.1 NC_004156.1 + 221852 0.71 0.988608
Target:  5'- aCGCUCUagaaaacgcuUGUACGAUACacuaGACUCg-- -3'
miRNA:   3'- gGCGAGA----------ACAUGUUGUGg---CUGAGaag -5'
16701 3' -49.1 NC_004156.1 + 112124 0.71 0.985429
Target:  5'- gUGCcCUUGUugAACAUuugCGACUCUUUg -3'
miRNA:   3'- gGCGaGAACAugUUGUG---GCUGAGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.