miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16954 5' -48.6 NC_004313.1 + 13632 0.66 0.945539
Target:  5'- cGCGCCgGCAGcc-GCCGUuauUGAgGCUCa -3'
miRNA:   3'- -CGCGG-UGUUauaCGGUA---ACUaCGAGg -5'
16954 5' -48.6 NC_004313.1 + 38133 0.66 0.934676
Target:  5'- uGCGCCAgcGUGacguUGCCGcccUUGAUGCa-- -3'
miRNA:   3'- -CGCGGUguUAU----ACGGU---AACUACGagg -5'
16954 5' -48.6 NC_004313.1 + 24446 0.66 0.934676
Target:  5'- aGCGCCuguuuguCGAUGuUGCuCAUUGGgcaGcCUCCa -3'
miRNA:   3'- -CGCGGu------GUUAU-ACG-GUAACUa--C-GAGG- -5'
16954 5' -48.6 NC_004313.1 + 1687 0.66 0.922533
Target:  5'- gGCGCCACGuuucuggGUGCCGUaUGAcacGgUCUa -3'
miRNA:   3'- -CGCGGUGUua-----UACGGUA-ACUa--CgAGG- -5'
16954 5' -48.6 NC_004313.1 + 4723 0.67 0.901915
Target:  5'- uGCGCCAgGAg--GCCAcggUGAUcaccgugggcgGUUCCg -3'
miRNA:   3'- -CGCGGUgUUauaCGGUa--ACUA-----------CGAGG- -5'
16954 5' -48.6 NC_004313.1 + 9619 0.68 0.878485
Target:  5'- uGCGCCAUAAUcgGCUuuUUGAgcacaaGUUCUu -3'
miRNA:   3'- -CGCGGUGUUAuaCGGu-AACUa-----CGAGG- -5'
16954 5' -48.6 NC_004313.1 + 14509 0.68 0.875992
Target:  5'- uGCGCCAUucUGUGCUgcagaggugaaaccGUaagguucaaGAUGCUCCa -3'
miRNA:   3'- -CGCGGUGuuAUACGG--------------UAa--------CUACGAGG- -5'
16954 5' -48.6 NC_004313.1 + 4272 0.69 0.813928
Target:  5'- uGCGCCAUAGcccccgGCCAUgaAUGCUUUg -3'
miRNA:   3'- -CGCGGUGUUaua---CGGUAacUACGAGG- -5'
16954 5' -48.6 NC_004313.1 + 29345 0.7 0.771911
Target:  5'- gGCuaCugAAUGUGCCAggUGAUagGUUCCu -3'
miRNA:   3'- -CGcgGugUUAUACGGUa-ACUA--CGAGG- -5'
16954 5' -48.6 NC_004313.1 + 6327 0.74 0.527932
Target:  5'- uCGCCGCGGUAUcaccGCCGaucaUGAagUGCUCCa -3'
miRNA:   3'- cGCGGUGUUAUA----CGGUa---ACU--ACGAGG- -5'
16954 5' -48.6 NC_004313.1 + 7639 0.76 0.419366
Target:  5'- uGCGCCGCGAg--GCCGcUGGUGaugUCCg -3'
miRNA:   3'- -CGCGGUGUUauaCGGUaACUACg--AGG- -5'
16954 5' -48.6 NC_004313.1 + 30761 0.77 0.361067
Target:  5'- aGCGCCACAGc--GUCAUUGAUGCggUCg -3'
miRNA:   3'- -CGCGGUGUUauaCGGUAACUACGa-GG- -5'
16954 5' -48.6 NC_004313.1 + 34119 1.16 0.001006
Target:  5'- gGCGCCACAAUAUGCCAUUGAUGCUCCg -3'
miRNA:   3'- -CGCGGUGUUAUACGGUAACUACGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.