Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16971 | 3' | -52.7 | NC_004323.1 | + | 120027 | 0.76 | 0.595393 |
Target: 5'- aGGCGACGGCGGCGaguugGCGGCAggcguUGGCa -3' miRNA: 3'- gCUGCUGCUGCUGCg----CGUCGU-----AUUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 65585 | 0.69 | 0.923628 |
Target: 5'- -aGCGGCGACGGaG-GCGGCGUuuCCg -3' miRNA: 3'- gcUGCUGCUGCUgCgCGUCGUAuuGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 40422 | 0.68 | 0.937707 |
Target: 5'- uCGGCaACGAgGugGCGCgaaucaccaacgacAGCAUGcGCCa -3' miRNA: 3'- -GCUGcUGCUgCugCGCG--------------UCGUAU-UGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 65748 | 0.68 | 0.943848 |
Target: 5'- uGACGACGACGgaaACGcCGCcucCGUcGCCg -3' miRNA: 3'- gCUGCUGCUGC---UGC-GCGuc-GUAuUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 88459 | 0.68 | 0.943848 |
Target: 5'- --uCGGCGguACGGCGCGCGGUuu--CCa -3' miRNA: 3'- gcuGCUGC--UGCUGCGCGUCGuauuGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 107563 | 0.67 | 0.952499 |
Target: 5'- --uUGACGGCGACGCauucgggcuuuGCGGCGgAGCa -3' miRNA: 3'- gcuGCUGCUGCUGCG-----------CGUCGUaUUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 46234 | 0.67 | 0.960205 |
Target: 5'- aCGGCGGCGACGAagacauUGCuauGCAUAaaGCUa -3' miRNA: 3'- -GCUGCUGCUGCUgc----GCGu--CGUAU--UGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 103540 | 0.67 | 0.963715 |
Target: 5'- uGugGGCGucgccauguACGGC-CGCGGCugGACCg -3' miRNA: 3'- gCugCUGC---------UGCUGcGCGUCGuaUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 81687 | 0.67 | 0.963715 |
Target: 5'- aCGACGugGACuuaaacgaGACGCGUucCAgaaAACCg -3' miRNA: 3'- -GCUGCugCUG--------CUGCGCGucGUa--UUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 118471 | 0.66 | 0.970074 |
Target: 5'- gGGCGGCGGCcAUGCGUgaaGGCGccgaAACCc -3' miRNA: 3'- gCUGCUGCUGcUGCGCG---UCGUa---UUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 74208 | 0.66 | 0.975593 |
Target: 5'- cCGAgcGCGGCGAgGCGguGC-UGGCg -3' miRNA: 3'- -GCUgcUGCUGCUgCGCguCGuAUUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 109081 | 0.66 | 0.978055 |
Target: 5'- uGAcCGGCGACGACGguaaaaGUAGCAcaaaUAAUUa -3' miRNA: 3'- gCU-GCUGCUGCUGCg-----CGUCGU----AUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 98746 | 0.66 | 0.978055 |
Target: 5'- gGACGGUGguucgauaaGCGGCGCGCGuGCAUugucaaauACCg -3' miRNA: 3'- gCUGCUGC---------UGCUGCGCGU-CGUAu-------UGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 93671 | 0.66 | 0.980329 |
Target: 5'- gGGCGA-GACG-CGCGUuuuuAGCGUgcuucuGACCa -3' miRNA: 3'- gCUGCUgCUGCuGCGCG----UCGUA------UUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 73788 | 0.68 | 0.929052 |
Target: 5'- ---gGGCGGCGGCGCaGUGGCAgguCCu -3' miRNA: 3'- gcugCUGCUGCUGCG-CGUCGUauuGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 12829 | 0.69 | 0.923628 |
Target: 5'- -uACGGuCGGCGGCGaaaGCAGCGUcGACa -3' miRNA: 3'- gcUGCU-GCUGCUGCg--CGUCGUA-UUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 103886 | 0.7 | 0.892845 |
Target: 5'- cCGuCGuugGGCGAUGCGgAGCGUGACg -3' miRNA: 3'- -GCuGCug-CUGCUGCGCgUCGUAUUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 87913 | 0.7 | 0.88597 |
Target: 5'- -cGCGGCGGCGAU-UGCAGCGgacuauuuaUAGCCa -3' miRNA: 3'- gcUGCUGCUGCUGcGCGUCGU---------AUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 14001 | 0.7 | 0.870786 |
Target: 5'- uCGACGACGACaGAaGCGCAuuaaaauGCAUAGa- -3' miRNA: 3'- -GCUGCUGCUG-CUgCGCGU-------CGUAUUgg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 117401 | 0.7 | 0.863978 |
Target: 5'- cCGACGAC-AUGuCGCGCAcGUucuUAACCg -3' miRNA: 3'- -GCUGCUGcUGCuGCGCGU-CGu--AUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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