Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16971 | 3' | -52.7 | NC_004323.1 | + | 73317 | 0.69 | 0.899484 |
Target: 5'- -uGCGACacuCGACGCGCuGCAuuUAAUCa -3' miRNA: 3'- gcUGCUGcu-GCUGCGCGuCGU--AUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 18323 | 0.69 | 0.905885 |
Target: 5'- gCGACGAUGugGACaacauGUGCgacauuAGgGUGGCCa -3' miRNA: 3'- -GCUGCUGCugCUG-----CGCG------UCgUAUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 12829 | 0.69 | 0.923628 |
Target: 5'- -uACGGuCGGCGGCGaaaGCAGCGUcGACa -3' miRNA: 3'- gcUGCU-GCUGCUGCg--CGUCGUA-UUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 73788 | 0.68 | 0.929052 |
Target: 5'- ---gGGCGGCGGCGCaGUGGCAgguCCu -3' miRNA: 3'- gcugCUGCUGCUGCG-CGUCGUauuGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 40422 | 0.68 | 0.937707 |
Target: 5'- uCGGCaACGAgGugGCGCgaaucaccaacgacAGCAUGcGCCa -3' miRNA: 3'- -GCUGcUGCUgCugCGCG--------------UCGUAU-UGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 65748 | 0.68 | 0.943848 |
Target: 5'- uGACGACGACGgaaACGcCGCcucCGUcGCCg -3' miRNA: 3'- gCUGCUGCUGC---UGC-GCGuc-GUAuUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 88459 | 0.68 | 0.943848 |
Target: 5'- --uCGGCGguACGGCGCGCGGUuu--CCa -3' miRNA: 3'- gcuGCUGC--UGCUGCGCGUCGuauuGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 107563 | 0.67 | 0.952499 |
Target: 5'- --uUGACGGCGACGCauucgggcuuuGCGGCGgAGCa -3' miRNA: 3'- gcuGCUGCUGCUGCG-----------CGUCGUaUUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 46234 | 0.67 | 0.960205 |
Target: 5'- aCGGCGGCGACGAagacauUGCuauGCAUAaaGCUa -3' miRNA: 3'- -GCUGCUGCUGCUgc----GCGu--CGUAU--UGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 103540 | 0.67 | 0.963715 |
Target: 5'- uGugGGCGucgccauguACGGC-CGCGGCugGACCg -3' miRNA: 3'- gCugCUGC---------UGCUGcGCGUCGuaUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 103886 | 0.7 | 0.892845 |
Target: 5'- cCGuCGuugGGCGAUGCGgAGCGUGACg -3' miRNA: 3'- -GCuGCug-CUGCUGCGCgUCGUAUUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 87913 | 0.7 | 0.88597 |
Target: 5'- -cGCGGCGGCGAU-UGCAGCGgacuauuuaUAGCCa -3' miRNA: 3'- gcUGCUGCUGCUGcGCGUCGU---------AUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 93671 | 0.66 | 0.980329 |
Target: 5'- gGGCGA-GACG-CGCGUuuuuAGCGUgcuucuGACCa -3' miRNA: 3'- gCUGCUgCUGCuGCGCG----UCGUA------UUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 28854 | 0.73 | 0.719104 |
Target: 5'- gCGACGcuucaauuGCGAaauaGCGCGCAGCcUGGCCa -3' miRNA: 3'- -GCUGC--------UGCUgc--UGCGCGUCGuAUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 40645 | 0.73 | 0.729135 |
Target: 5'- aCGGcCGACGACGACGCGUacacGGUGgugAACa -3' miRNA: 3'- -GCU-GCUGCUGCUGCGCG----UCGUa--UUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 47100 | 0.72 | 0.777802 |
Target: 5'- -uGCGACG-CGACGCGCgcuaaagaauGGCA-AACCa -3' miRNA: 3'- gcUGCUGCuGCUGCGCG----------UCGUaUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 80084 | 0.71 | 0.831679 |
Target: 5'- uGugGugGGacaaaaucauauUGGCGCGCAGCAcgGACg -3' miRNA: 3'- gCugCugCU------------GCUGCGCGUCGUa-UUGg -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 9858 | 0.7 | 0.85621 |
Target: 5'- gGAUGACGGCGGCG-GCAGggaauggguCGUAgacGCCg -3' miRNA: 3'- gCUGCUGCUGCUGCgCGUC---------GUAU---UGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 117401 | 0.7 | 0.863978 |
Target: 5'- cCGACGAC-AUGuCGCGCAcGUucuUAACCg -3' miRNA: 3'- -GCUGCUGcUGCuGCGCGU-CGu--AUUGG- -5' |
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16971 | 3' | -52.7 | NC_004323.1 | + | 14001 | 0.7 | 0.870786 |
Target: 5'- uCGACGACGACaGAaGCGCAuuaaaauGCAUAGa- -3' miRNA: 3'- -GCUGCUGCUG-CUgCGCGU-------CGUAUUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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