miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16971 3' -52.7 NC_004323.1 + 72073 0.66 0.980329
Target:  5'- gCGACacaACGGCGuACGUGCGGCuGUuaagaauuaAACCg -3'
miRNA:   3'- -GCUGc--UGCUGC-UGCGCGUCG-UA---------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 65642 0.69 0.923628
Target:  5'- gGGCGACGGCG-UGUGUacAGCAgcguCCg -3'
miRNA:   3'- gCUGCUGCUGCuGCGCG--UCGUauu-GG- -5'
16971 3' -52.7 NC_004323.1 + 123451 0.68 0.933214
Target:  5'- uGGCGccucuaaACGcaaaaacACGACGCGCAGCgAUGAUUa -3'
miRNA:   3'- gCUGC-------UGC-------UGCUGCGCGUCG-UAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 75370 0.68 0.933723
Target:  5'- aCGACGcguuCGACGACGCGUcuguaaaaaaaugGGCGUucaaauugGACg -3'
miRNA:   3'- -GCUGCu---GCUGCUGCGCG-------------UCGUA--------UUGg -5'
16971 3' -52.7 NC_004323.1 + 1049 0.68 0.939161
Target:  5'- uCGAUGACcaGCGGCGUGCcGCAUGcaACg -3'
miRNA:   3'- -GCUGCUGc-UGCUGCGCGuCGUAU--UGg -5'
16971 3' -52.7 NC_004323.1 + 9163 0.68 0.939161
Target:  5'- aCGGCGAUGACGuCGuCGCuGuCGUugucacugGACCa -3'
miRNA:   3'- -GCUGCUGCUGCuGC-GCGuC-GUA--------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 60026 0.67 0.960205
Target:  5'- gCGACGAaGACGACaGCGaCGGU--GAUCg -3'
miRNA:   3'- -GCUGCUgCUGCUG-CGC-GUCGuaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 79868 0.67 0.967003
Target:  5'- gGAU-AUGAUGAUGCGCAuGUAaAACCg -3'
miRNA:   3'- gCUGcUGCUGCUGCGCGU-CGUaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 75194 0.66 0.970074
Target:  5'- uGAguuUGAUGACGACGCGCcugAUGACa -3'
miRNA:   3'- gCU---GCUGCUGCUGCGCGucgUAUUGg -5'
16971 3' -52.7 NC_004323.1 + 65585 0.69 0.923628
Target:  5'- -aGCGGCGACGGaG-GCGGCGUuuCCg -3'
miRNA:   3'- gcUGCUGCUGCUgCgCGUCGUAuuGG- -5'
16971 3' -52.7 NC_004323.1 + 88892 0.69 0.923628
Target:  5'- aGACGACuuguugcCGACuCGCAGCAgcaaacgGGCCa -3'
miRNA:   3'- gCUGCUGcu-----GCUGcGCGUCGUa------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 18323 0.69 0.905885
Target:  5'- gCGACGAUGugGACaacauGUGCgacauuAGgGUGGCCa -3'
miRNA:   3'- -GCUGCUGCugCUG-----CGCG------UCgUAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 67954 0.76 0.58507
Target:  5'- gCGGCGACGACGACcauuGgGUAGUGgcGCCg -3'
miRNA:   3'- -GCUGCUGCUGCUG----CgCGUCGUauUGG- -5'
16971 3' -52.7 NC_004323.1 + 120027 0.76 0.595393
Target:  5'- aGGCGACGGCGGCGaguugGCGGCAggcguUGGCa -3'
miRNA:   3'- gCUGCUGCUGCUGCg----CGUCGU-----AUUGg -5'
16971 3' -52.7 NC_004323.1 + 47982 0.74 0.688588
Target:  5'- uGAUGugGACaACGUGCGuGCAUgGACCa -3'
miRNA:   3'- gCUGCugCUGcUGCGCGU-CGUA-UUGG- -5'
16971 3' -52.7 NC_004323.1 + 115717 0.72 0.777802
Target:  5'- uCGACaAUGugGACGCGUuuguGCAUAuCCu -3'
miRNA:   3'- -GCUGcUGCugCUGCGCGu---CGUAUuGG- -5'
16971 3' -52.7 NC_004323.1 + 36031 0.72 0.796396
Target:  5'- uGugGACGAUGGCGCgGC-GCAUuuggaaucGCCg -3'
miRNA:   3'- gCugCUGCUGCUGCG-CGuCGUAu-------UGG- -5'
16971 3' -52.7 NC_004323.1 + 109654 0.72 0.796396
Target:  5'- -cAUGACGuuGCGAgaGCGCGGCGUAACa -3'
miRNA:   3'- gcUGCUGC--UGCUg-CGCGUCGUAUUGg -5'
16971 3' -52.7 NC_004323.1 + 108652 0.69 0.898831
Target:  5'- cCGACGAauaacguuauguuCGACGACGCGuCGGUccuuugGAUCg -3'
miRNA:   3'- -GCUGCU-------------GCUGCUGCGC-GUCGua----UUGG- -5'
16971 3' -52.7 NC_004323.1 + 73317 0.69 0.899484
Target:  5'- -uGCGACacuCGACGCGCuGCAuuUAAUCa -3'
miRNA:   3'- gcUGCUGcu-GCUGCGCGuCGU--AUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.