miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16971 3' -52.7 NC_004323.1 + 62114 1.14 0.003012
Target:  5'- aCGACGACGACGACGCGCAGCAUAACCg -3'
miRNA:   3'- -GCUGCUGCUGCUGCGCGUCGUAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 103540 0.67 0.963715
Target:  5'- uGugGGCGucgccauguACGGC-CGCGGCugGACCg -3'
miRNA:   3'- gCugCUGC---------UGCUGcGCGUCGuaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 118471 0.66 0.970074
Target:  5'- gGGCGGCGGCcAUGCGUgaaGGCGccgaAACCc -3'
miRNA:   3'- gCUGCUGCUGcUGCGCG---UCGUa---UUGG- -5'
16971 3' -52.7 NC_004323.1 + 93671 0.66 0.980329
Target:  5'- gGGCGA-GACG-CGCGUuuuuAGCGUgcuucuGACCa -3'
miRNA:   3'- gCUGCUgCUGCuGCGCG----UCGUA------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 80084 0.71 0.831679
Target:  5'- uGugGugGGacaaaaucauauUGGCGCGCAGCAcgGACg -3'
miRNA:   3'- gCugCugCU------------GCUGCGCGUCGUa-UUGg -5'
16971 3' -52.7 NC_004323.1 + 9858 0.7 0.85621
Target:  5'- gGAUGACGGCGGCG-GCAGggaauggguCGUAgacGCCg -3'
miRNA:   3'- gCUGCUGCUGCUGCgCGUC---------GUAU---UGG- -5'
16971 3' -52.7 NC_004323.1 + 14001 0.7 0.870786
Target:  5'- uCGACGACGACaGAaGCGCAuuaaaauGCAUAGa- -3'
miRNA:   3'- -GCUGCUGCUG-CUgCGCGU-------CGUAUUgg -5'
16971 3' -52.7 NC_004323.1 + 87913 0.7 0.88597
Target:  5'- -cGCGGCGGCGAU-UGCAGCGgacuauuuaUAGCCa -3'
miRNA:   3'- gcUGCUGCUGCUGcGCGUCGU---------AUUGG- -5'
16971 3' -52.7 NC_004323.1 + 73788 0.68 0.929052
Target:  5'- ---gGGCGGCGGCGCaGUGGCAgguCCu -3'
miRNA:   3'- gcugCUGCUGCUGCG-CGUCGUauuGG- -5'
16971 3' -52.7 NC_004323.1 + 46234 0.67 0.960205
Target:  5'- aCGGCGGCGACGAagacauUGCuauGCAUAaaGCUa -3'
miRNA:   3'- -GCUGCUGCUGCUgc----GCGu--CGUAU--UGG- -5'
16971 3' -52.7 NC_004323.1 + 65748 0.68 0.943848
Target:  5'- uGACGACGACGgaaACGcCGCcucCGUcGCCg -3'
miRNA:   3'- gCUGCUGCUGC---UGC-GCGuc-GUAuUGG- -5'
16971 3' -52.7 NC_004323.1 + 12829 0.69 0.923628
Target:  5'- -uACGGuCGGCGGCGaaaGCAGCGUcGACa -3'
miRNA:   3'- gcUGCU-GCUGCUGCg--CGUCGUA-UUGg -5'
16971 3' -52.7 NC_004323.1 + 28854 0.73 0.719104
Target:  5'- gCGACGcuucaauuGCGAaauaGCGCGCAGCcUGGCCa -3'
miRNA:   3'- -GCUGC--------UGCUgc--UGCGCGUCGuAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 88459 0.68 0.943848
Target:  5'- --uCGGCGguACGGCGCGCGGUuu--CCa -3'
miRNA:   3'- gcuGCUGC--UGCUGCGCGUCGuauuGG- -5'
16971 3' -52.7 NC_004323.1 + 40645 0.73 0.729135
Target:  5'- aCGGcCGACGACGACGCGUacacGGUGgugAACa -3'
miRNA:   3'- -GCU-GCUGCUGCUGCGCG----UCGUa--UUGg -5'
16971 3' -52.7 NC_004323.1 + 103886 0.7 0.892845
Target:  5'- cCGuCGuugGGCGAUGCGgAGCGUGACg -3'
miRNA:   3'- -GCuGCug-CUGCUGCGCgUCGUAUUGg -5'
16971 3' -52.7 NC_004323.1 + 107563 0.67 0.952499
Target:  5'- --uUGACGGCGACGCauucgggcuuuGCGGCGgAGCa -3'
miRNA:   3'- gcuGCUGCUGCUGCG-----------CGUCGUaUUGg -5'
16971 3' -52.7 NC_004323.1 + 81687 0.67 0.963715
Target:  5'- aCGACGugGACuuaaacgaGACGCGUucCAgaaAACCg -3'
miRNA:   3'- -GCUGCugCUG--------CUGCGCGucGUa--UUGG- -5'
16971 3' -52.7 NC_004323.1 + 47100 0.72 0.777802
Target:  5'- -uGCGACG-CGACGCGCgcuaaagaauGGCA-AACCa -3'
miRNA:   3'- gcUGCUGCuGCUGCGCG----------UCGUaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 117401 0.7 0.863978
Target:  5'- cCGACGAC-AUGuCGCGCAcGUucuUAACCg -3'
miRNA:   3'- -GCUGCUGcUGCuGCGCGU-CGu--AUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.