miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16971 3' -52.7 NC_004323.1 + 1049 0.68 0.939161
Target:  5'- uCGAUGACcaGCGGCGUGCcGCAUGcaACg -3'
miRNA:   3'- -GCUGCUGc-UGCUGCGCGuCGUAU--UGg -5'
16971 3' -52.7 NC_004323.1 + 9163 0.68 0.939161
Target:  5'- aCGGCGAUGACGuCGuCGCuGuCGUugucacugGACCa -3'
miRNA:   3'- -GCUGCUGCUGCuGC-GCGuC-GUA--------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 9858 0.7 0.85621
Target:  5'- gGAUGACGGCGGCG-GCAGggaauggguCGUAgacGCCg -3'
miRNA:   3'- gCUGCUGCUGCUGCgCGUC---------GUAU---UGG- -5'
16971 3' -52.7 NC_004323.1 + 12829 0.69 0.923628
Target:  5'- -uACGGuCGGCGGCGaaaGCAGCGUcGACa -3'
miRNA:   3'- gcUGCU-GCUGCUGCg--CGUCGUA-UUGg -5'
16971 3' -52.7 NC_004323.1 + 14001 0.7 0.870786
Target:  5'- uCGACGACGACaGAaGCGCAuuaaaauGCAUAGa- -3'
miRNA:   3'- -GCUGCUGCUG-CUgCGCGU-------CGUAUUgg -5'
16971 3' -52.7 NC_004323.1 + 18323 0.69 0.905885
Target:  5'- gCGACGAUGugGACaacauGUGCgacauuAGgGUGGCCa -3'
miRNA:   3'- -GCUGCUGCugCUG-----CGCG------UCgUAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 28854 0.73 0.719104
Target:  5'- gCGACGcuucaauuGCGAaauaGCGCGCAGCcUGGCCa -3'
miRNA:   3'- -GCUGC--------UGCUgc--UGCGCGUCGuAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 36031 0.72 0.796396
Target:  5'- uGugGACGAUGGCGCgGC-GCAUuuggaaucGCCg -3'
miRNA:   3'- gCugCUGCUGCUGCG-CGuCGUAu-------UGG- -5'
16971 3' -52.7 NC_004323.1 + 40422 0.68 0.937707
Target:  5'- uCGGCaACGAgGugGCGCgaaucaccaacgacAGCAUGcGCCa -3'
miRNA:   3'- -GCUGcUGCUgCugCGCG--------------UCGUAU-UGG- -5'
16971 3' -52.7 NC_004323.1 + 40645 0.73 0.729135
Target:  5'- aCGGcCGACGACGACGCGUacacGGUGgugAACa -3'
miRNA:   3'- -GCU-GCUGCUGCUGCGCG----UCGUa--UUGg -5'
16971 3' -52.7 NC_004323.1 + 46234 0.67 0.960205
Target:  5'- aCGGCGGCGACGAagacauUGCuauGCAUAaaGCUa -3'
miRNA:   3'- -GCUGCUGCUGCUgc----GCGu--CGUAU--UGG- -5'
16971 3' -52.7 NC_004323.1 + 47100 0.72 0.777802
Target:  5'- -uGCGACG-CGACGCGCgcuaaagaauGGCA-AACCa -3'
miRNA:   3'- gcUGCUGCuGCUGCGCG----------UCGUaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 47982 0.74 0.688588
Target:  5'- uGAUGugGACaACGUGCGuGCAUgGACCa -3'
miRNA:   3'- gCUGCugCUGcUGCGCGU-CGUA-UUGG- -5'
16971 3' -52.7 NC_004323.1 + 60026 0.67 0.960205
Target:  5'- gCGACGAaGACGACaGCGaCGGU--GAUCg -3'
miRNA:   3'- -GCUGCUgCUGCUG-CGC-GUCGuaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 62114 1.14 0.003012
Target:  5'- aCGACGACGACGACGCGCAGCAUAACCg -3'
miRNA:   3'- -GCUGCUGCUGCUGCGCGUCGUAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 65585 0.69 0.923628
Target:  5'- -aGCGGCGACGGaG-GCGGCGUuuCCg -3'
miRNA:   3'- gcUGCUGCUGCUgCgCGUCGUAuuGG- -5'
16971 3' -52.7 NC_004323.1 + 65642 0.69 0.923628
Target:  5'- gGGCGACGGCG-UGUGUacAGCAgcguCCg -3'
miRNA:   3'- gCUGCUGCUGCuGCGCG--UCGUauu-GG- -5'
16971 3' -52.7 NC_004323.1 + 65748 0.68 0.943848
Target:  5'- uGACGACGACGgaaACGcCGCcucCGUcGCCg -3'
miRNA:   3'- gCUGCUGCUGC---UGC-GCGuc-GUAuUGG- -5'
16971 3' -52.7 NC_004323.1 + 67954 0.76 0.58507
Target:  5'- gCGGCGACGACGACcauuGgGUAGUGgcGCCg -3'
miRNA:   3'- -GCUGCUGCUGCUG----CgCGUCGUauUGG- -5'
16971 3' -52.7 NC_004323.1 + 72073 0.66 0.980329
Target:  5'- gCGACacaACGGCGuACGUGCGGCuGUuaagaauuaAACCg -3'
miRNA:   3'- -GCUGc--UGCUGC-UGCGCGUCG-UA---------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.