miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16971 3' -52.7 NC_004323.1 + 124446 0.66 0.980329
Target:  5'- uCGAUaaaGGCG-CGGCGCGCGaauGCAgcUGAUCa -3'
miRNA:   3'- -GCUG---CUGCuGCUGCGCGU---CGU--AUUGG- -5'
16971 3' -52.7 NC_004323.1 + 123451 0.68 0.933214
Target:  5'- uGGCGccucuaaACGcaaaaacACGACGCGCAGCgAUGAUUa -3'
miRNA:   3'- gCUGC-------UGC-------UGCUGCGCGUCG-UAUUGG- -5'
16971 3' -52.7 NC_004323.1 + 120731 0.8 0.393527
Target:  5'- cCGAUGACGACGGCGCGUGuuGUcACCa -3'
miRNA:   3'- -GCUGCUGCUGCUGCGCGUcgUAuUGG- -5'
16971 3' -52.7 NC_004323.1 + 120027 0.76 0.595393
Target:  5'- aGGCGACGGCGGCGaguugGCGGCAggcguUGGCa -3'
miRNA:   3'- gCUGCUGCUGCUGCg----CGUCGU-----AUUGg -5'
16971 3' -52.7 NC_004323.1 + 118471 0.66 0.970074
Target:  5'- gGGCGGCGGCcAUGCGUgaaGGCGccgaAACCc -3'
miRNA:   3'- gCUGCUGCUGcUGCGCG---UCGUa---UUGG- -5'
16971 3' -52.7 NC_004323.1 + 117401 0.7 0.863978
Target:  5'- cCGACGAC-AUGuCGCGCAcGUucuUAACCg -3'
miRNA:   3'- -GCUGCUGcUGCuGCGCGU-CGu--AUUGG- -5'
16971 3' -52.7 NC_004323.1 + 115717 0.72 0.777802
Target:  5'- uCGACaAUGugGACGCGUuuguGCAUAuCCu -3'
miRNA:   3'- -GCUGcUGCugCUGCGCGu---CGUAUuGG- -5'
16971 3' -52.7 NC_004323.1 + 109654 0.72 0.796396
Target:  5'- -cAUGACGuuGCGAgaGCGCGGCGUAACa -3'
miRNA:   3'- gcUGCUGC--UGCUg-CGCGUCGUAUUGg -5'
16971 3' -52.7 NC_004323.1 + 109081 0.66 0.978055
Target:  5'- uGAcCGGCGACGACGguaaaaGUAGCAcaaaUAAUUa -3'
miRNA:   3'- gCU-GCUGCUGCUGCg-----CGUCGU----AUUGG- -5'
16971 3' -52.7 NC_004323.1 + 108652 0.69 0.898831
Target:  5'- cCGACGAauaacguuauguuCGACGACGCGuCGGUccuuugGAUCg -3'
miRNA:   3'- -GCUGCU-------------GCUGCUGCGC-GUCGua----UUGG- -5'
16971 3' -52.7 NC_004323.1 + 107563 0.67 0.952499
Target:  5'- --uUGACGGCGACGCauucgggcuuuGCGGCGgAGCa -3'
miRNA:   3'- gcuGCUGCUGCUGCG-----------CGUCGUaUUGg -5'
16971 3' -52.7 NC_004323.1 + 103886 0.7 0.892845
Target:  5'- cCGuCGuugGGCGAUGCGgAGCGUGACg -3'
miRNA:   3'- -GCuGCug-CUGCUGCGCgUCGUAUUGg -5'
16971 3' -52.7 NC_004323.1 + 103540 0.67 0.963715
Target:  5'- uGugGGCGucgccauguACGGC-CGCGGCugGACCg -3'
miRNA:   3'- gCugCUGC---------UGCUGcGCGUCGuaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 98746 0.66 0.978055
Target:  5'- gGACGGUGguucgauaaGCGGCGCGCGuGCAUugucaaauACCg -3'
miRNA:   3'- gCUGCUGC---------UGCUGCGCGU-CGUAu-------UGG- -5'
16971 3' -52.7 NC_004323.1 + 93671 0.66 0.980329
Target:  5'- gGGCGA-GACG-CGCGUuuuuAGCGUgcuucuGACCa -3'
miRNA:   3'- gCUGCUgCUGCuGCGCG----UCGUA------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 88892 0.69 0.923628
Target:  5'- aGACGACuuguugcCGACuCGCAGCAgcaaacgGGCCa -3'
miRNA:   3'- gCUGCUGcu-----GCUGcGCGUCGUa------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 88459 0.68 0.943848
Target:  5'- --uCGGCGguACGGCGCGCGGUuu--CCa -3'
miRNA:   3'- gcuGCUGC--UGCUGCGCGUCGuauuGG- -5'
16971 3' -52.7 NC_004323.1 + 87913 0.7 0.88597
Target:  5'- -cGCGGCGGCGAU-UGCAGCGgacuauuuaUAGCCa -3'
miRNA:   3'- gcUGCUGCUGCUGcGCGUCGU---------AUUGG- -5'
16971 3' -52.7 NC_004323.1 + 81687 0.67 0.963715
Target:  5'- aCGACGugGACuuaaacgaGACGCGUucCAgaaAACCg -3'
miRNA:   3'- -GCUGCugCUG--------CUGCGCGucGUa--UUGG- -5'
16971 3' -52.7 NC_004323.1 + 80084 0.71 0.831679
Target:  5'- uGugGugGGacaaaaucauauUGGCGCGCAGCAcgGACg -3'
miRNA:   3'- gCugCugCU------------GCUGCGCGUCGUa-UUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.