miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16978 3' -46.4 NC_004323.1 + 37744 0.66 0.999962
Target:  5'- uGCGGCGCAAuuaaaaaauuuccuCGUCGUUGUUaaUAAUCu -3'
miRNA:   3'- -UGCUGCGUUu-------------GCAGCAGUAAg-AUUGG- -5'
16978 3' -46.4 NC_004323.1 + 21303 0.66 0.999957
Target:  5'- aACGGgGCcgugcCGUCGuUCAUUUUAGCUc -3'
miRNA:   3'- -UGCUgCGuuu--GCAGC-AGUAAGAUUGG- -5'
16978 3' -46.4 NC_004323.1 + 120739 0.66 0.999957
Target:  5'- gACGGCGCG--UGUUGUCAccauuuauUUUUGACg -3'
miRNA:   3'- -UGCUGCGUuuGCAGCAGU--------AAGAUUGg -5'
16978 3' -46.4 NC_004323.1 + 13511 0.66 0.999924
Target:  5'- aGCGGCGC---UGUgGUUAUUUUAACg -3'
miRNA:   3'- -UGCUGCGuuuGCAgCAGUAAGAUUGg -5'
16978 3' -46.4 NC_004323.1 + 18522 0.67 0.999868
Target:  5'- uAUGGCGCAAACGU-GUUcgAUUagaaUAACCc -3'
miRNA:   3'- -UGCUGCGUUUGCAgCAG--UAAg---AUUGG- -5'
16978 3' -46.4 NC_004323.1 + 119318 0.67 0.999829
Target:  5'- gACGugGUAGAUGaCGUCAacuguuuuauacUUCaagAACCa -3'
miRNA:   3'- -UGCugCGUUUGCaGCAGU------------AAGa--UUGG- -5'
16978 3' -46.4 NC_004323.1 + 86617 0.67 0.99978
Target:  5'- gAUGAaacgGCAAACGUUGcggaGUUCUAACUc -3'
miRNA:   3'- -UGCUg---CGUUUGCAGCag--UAAGAUUGG- -5'
16978 3' -46.4 NC_004323.1 + 88182 0.67 0.999718
Target:  5'- gACGucCGCAGACGaUGUCGUUaaucguGCCg -3'
miRNA:   3'- -UGCu-GCGUUUGCaGCAGUAAgau---UGG- -5'
16978 3' -46.4 NC_004323.1 + 40472 0.67 0.999675
Target:  5'- uACGACGCuuGuucaccaccguguacGCGUCGUCGUc--GGCCg -3'
miRNA:   3'- -UGCUGCGu-U---------------UGCAGCAGUAagaUUGG- -5'
16978 3' -46.4 NC_004323.1 + 40248 0.68 0.999549
Target:  5'- uUGGCGCAuGCuGUCGUUggugAUUCgcGCCa -3'
miRNA:   3'- uGCUGCGUuUG-CAGCAG----UAAGauUGG- -5'
16978 3' -46.4 NC_004323.1 + 59677 0.68 0.999549
Target:  5'- cCGGCGUggGCGUCGUCuacacUUUUAu-- -3'
miRNA:   3'- uGCUGCGuuUGCAGCAGu----AAGAUugg -5'
16978 3' -46.4 NC_004323.1 + 48290 0.68 0.999435
Target:  5'- uUGACGCAAuggagGCGUUGUUuaaaUCUAcACCa -3'
miRNA:   3'- uGCUGCGUU-----UGCAGCAGua--AGAU-UGG- -5'
16978 3' -46.4 NC_004323.1 + 53976 0.68 0.999435
Target:  5'- cCGACGCccGCGaCGUUcgAUUCUGGCg -3'
miRNA:   3'- uGCUGCGuuUGCaGCAG--UAAGAUUGg -5'
16978 3' -46.4 NC_004323.1 + 113992 0.69 0.998415
Target:  5'- -aGACGuCAAGaGUCGUUAUUUgcGCCg -3'
miRNA:   3'- ugCUGC-GUUUgCAGCAGUAAGauUGG- -5'
16978 3' -46.4 NC_004323.1 + 33889 0.7 0.996145
Target:  5'- -aGACGCAAGCGcuUCGa-GUUUUGGCCc -3'
miRNA:   3'- ugCUGCGUUUGC--AGCagUAAGAUUGG- -5'
16978 3' -46.4 NC_004323.1 + 9162 0.7 0.996145
Target:  5'- aACGGCGauGACGUCGUCGcugUCguugucacugGACCa -3'
miRNA:   3'- -UGCUGCguUUGCAGCAGUa--AGa---------UUGG- -5'
16978 3' -46.4 NC_004323.1 + 68118 0.71 0.992819
Target:  5'- gGCGGCGCcacuacccAAugGUCGUCG-UCgccGCCu -3'
miRNA:   3'- -UGCUGCG--------UUugCAGCAGUaAGau-UGG- -5'
16978 3' -46.4 NC_004323.1 + 70990 0.73 0.974493
Target:  5'- uUGACGCGcACGUCGUCucuguugauUUCUGuauaGCCu -3'
miRNA:   3'- uGCUGCGUuUGCAGCAGu--------AAGAU----UGG- -5'
16978 3' -46.4 NC_004323.1 + 65597 0.74 0.961541
Target:  5'- gGCGGCGUuuccguCGUCGUCAUUCUc--- -3'
miRNA:   3'- -UGCUGCGuuu---GCAGCAGUAAGAuugg -5'
16978 3' -46.4 NC_004323.1 + 75627 0.74 0.957697
Target:  5'- uGCGGCGUAAAUG-CGUCAUauUCUGuagauCCg -3'
miRNA:   3'- -UGCUGCGUUUGCaGCAGUA--AGAUu----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.