miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 6079 0.67 0.862094
Target:  5'- --cUCGCGAcacGCCUCGuCGCG-CAGCa -3'
miRNA:   3'- agcAGUGCU---UGGAGCuGUGCuGUUGc -5'
16990 5' -50.9 NC_004333.2 + 17933 0.68 0.853615
Target:  5'- aCGUCAUGAACgcacugaUCGcGCGCGGCGcGCGa -3'
miRNA:   3'- aGCAGUGCUUGg------AGC-UGUGCUGU-UGC- -5'
16990 5' -50.9 NC_004333.2 + 27066 0.68 0.853615
Target:  5'- gCGcUCGCGAACaUCaGAC-CGACGGCGu -3'
miRNA:   3'- aGC-AGUGCUUGgAG-CUGuGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 3027 0.68 0.853615
Target:  5'- gCG-CGCGAACUUCaGAUcguACGGCAGCu -3'
miRNA:   3'- aGCaGUGCUUGGAG-CUG---UGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 47923 0.68 0.853615
Target:  5'- gCGUgACGAccacAUCgaaCGGCACGGCGugGg -3'
miRNA:   3'- aGCAgUGCU----UGGa--GCUGUGCUGUugC- -5'
16990 5' -50.9 NC_004333.2 + 25719 0.68 0.853615
Target:  5'- aUGuUCACGAGCCUCGGgcaggucgccauCGCGuuccuCGGCGg -3'
miRNA:   3'- aGC-AGUGCUUGGAGCU------------GUGCu----GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 41810 0.68 0.853615
Target:  5'- -gGUCAagcuGCCcgaCGGCACGACGGCGc -3'
miRNA:   3'- agCAGUgcu-UGGa--GCUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 12963 0.68 0.853615
Target:  5'- gUUGUCGCGAuacgguugaucAgCUCGGCGCGcauCGACa -3'
miRNA:   3'- -AGCAGUGCU-----------UgGAGCUGUGCu--GUUGc -5'
16990 5' -50.9 NC_004333.2 + 2780 0.68 0.848411
Target:  5'- uUCGUCACGAccgugaagcgguugcGCagggcaUCGuACGCGACcACGa -3'
miRNA:   3'- -AGCAGUGCU---------------UGg-----AGC-UGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 32179 0.68 0.844894
Target:  5'- cUCGUCGCaGACCUCGuugACcUGAuCAACGa -3'
miRNA:   3'- -AGCAGUGcUUGGAGC---UGuGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 22815 0.68 0.844894
Target:  5'- uUCGUCGCGcuguCgCUCGugAaCGugAGCGa -3'
miRNA:   3'- -AGCAGUGCuu--G-GAGCugU-GCugUUGC- -5'
16990 5' -50.9 NC_004333.2 + 7702 0.68 0.835939
Target:  5'- gUCGUaGCGGugaUCGGCGCGgACAGCGa -3'
miRNA:   3'- -AGCAgUGCUuggAGCUGUGC-UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 25104 0.68 0.835939
Target:  5'- cCGUCAcucCGGGCacggCGAgCACGGCGGCGc -3'
miRNA:   3'- aGCAGU---GCUUGga--GCU-GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 41551 0.68 0.826761
Target:  5'- gCGUCGCGAugCUCacGAC-CGGCuucAACGc -3'
miRNA:   3'- aGCAGUGCUugGAG--CUGuGCUG---UUGC- -5'
16990 5' -50.9 NC_004333.2 + 8962 0.68 0.826761
Target:  5'- gCGUgCGCGGGCUggaUCGugggccguGCGCGGCGGCGa -3'
miRNA:   3'- aGCA-GUGCUUGG---AGC--------UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 25296 0.69 0.807773
Target:  5'- gCGUCGC-AACCgggcCGACGcCGGCGACu -3'
miRNA:   3'- aGCAGUGcUUGGa---GCUGU-GCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 27405 0.69 0.807773
Target:  5'- cCGUCAUGuuuGCCguaacccuGCGCGGCGACGg -3'
miRNA:   3'- aGCAGUGCu--UGGagc-----UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 7659 0.69 0.807773
Target:  5'- uUCGuUCACGAccGCUUCGACugcCGGCGAa- -3'
miRNA:   3'- -AGC-AGUGCU--UGGAGCUGu--GCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 8625 0.69 0.807773
Target:  5'- aUCGUCACGAaagucgacgucaACaUCGGCGCcGCAACc -3'
miRNA:   3'- -AGCAGUGCU------------UGgAGCUGUGcUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 27609 0.69 0.807773
Target:  5'- aCGgCGCG-ACC-CGACGCGcCGACGa -3'
miRNA:   3'- aGCaGUGCuUGGaGCUGUGCuGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.