miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 27287 0.66 0.907466
Target:  5'- gUCGcCACGAGCCggCGAaacCGAUGAUGc -3'
miRNA:   3'- -AGCaGUGCUUGGa-GCUgu-GCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 6115 0.66 0.907466
Target:  5'- cUCGUCGUGAAUCUCG-UACGAgucgcuuuCGGCGa -3'
miRNA:   3'- -AGCAGUGCUUGGAGCuGUGCU--------GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 14170 0.66 0.907466
Target:  5'- -aGUCGCGAuCCaaaacaacacaaUCGGCACGuGCGACc -3'
miRNA:   3'- agCAGUGCUuGG------------AGCUGUGC-UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 2101 0.66 0.900589
Target:  5'- gUUGUaCGCGAGCaucgccucgaaCUCGGCGCGuuGCAACu -3'
miRNA:   3'- -AGCA-GUGCUUG-----------GAGCUGUGC--UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 46929 0.66 0.900589
Target:  5'- gCGcCGCGaAGCCUCG-CGCG-CAGCc -3'
miRNA:   3'- aGCaGUGC-UUGGAGCuGUGCuGUUGc -5'
16990 5' -50.9 NC_004333.2 + 46137 0.66 0.900589
Target:  5'- aUCG-CGCGGGCgUCGACGUGAuCGAUGc -3'
miRNA:   3'- -AGCaGUGCUUGgAGCUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 8336 0.66 0.900589
Target:  5'- uUCGUCuuGAAcacuuCCUgGAuCACGGCAGCc -3'
miRNA:   3'- -AGCAGugCUU-----GGAgCU-GUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 10627 0.66 0.900589
Target:  5'- gCGUCgGCGAGCUgacGCACGAgCAGCGc -3'
miRNA:   3'- aGCAG-UGCUUGGagcUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27855 0.67 0.896328
Target:  5'- aCGUCGCuGAGCUucaccggcccugcguUCGAgUACGGCGGCa -3'
miRNA:   3'- aGCAGUG-CUUGG---------------AGCU-GUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 20293 0.67 0.893431
Target:  5'- aUCGgugCAUauAACCUCGcCGCGACGugGu -3'
miRNA:   3'- -AGCa--GUGc-UUGGAGCuGUGCUGUugC- -5'
16990 5' -50.9 NC_004333.2 + 27676 0.67 0.893431
Target:  5'- -aGUCGCGcACCUgaACGCGcuGCAGCGa -3'
miRNA:   3'- agCAGUGCuUGGAgcUGUGC--UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 45676 0.67 0.893431
Target:  5'- aCGUCGCGcccGAUCUCGA---GGCAGCGu -3'
miRNA:   3'- aGCAGUGC---UUGGAGCUgugCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 10972 0.67 0.893431
Target:  5'- gCGUCGCGcggaaCUCGGCACcGGCGcGCGu -3'
miRNA:   3'- aGCAGUGCuug--GAGCUGUG-CUGU-UGC- -5'
16990 5' -50.9 NC_004333.2 + 10828 0.67 0.885998
Target:  5'- aCGUCGCGuAGCCagggCGACGCaGAUucgAGCGc -3'
miRNA:   3'- aGCAGUGC-UUGGa---GCUGUG-CUG---UUGC- -5'
16990 5' -50.9 NC_004333.2 + 23429 0.67 0.878293
Target:  5'- aUCGUCGCcgcguucguGAGCggcuuCUCGAC-CGAUGACGg -3'
miRNA:   3'- -AGCAGUG---------CUUG-----GAGCUGuGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 44315 0.67 0.878293
Target:  5'- --aUUugGAACCUCGuucUGCGGCGGCa -3'
miRNA:   3'- agcAGugCUUGGAGCu--GUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 268 0.67 0.878293
Target:  5'- gUCGUCACGccGCCgagcaCGGuCACGGuCGACGu -3'
miRNA:   3'- -AGCAGUGCu-UGGa----GCU-GUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 16649 0.67 0.875929
Target:  5'- aUCGUCgACGAACUggUCGugACGcucgaacuagacgcGCGACa -3'
miRNA:   3'- -AGCAG-UGCUUGG--AGCugUGC--------------UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 38900 0.67 0.870322
Target:  5'- cCGcuUCGCGcugaUCGGCACGGCAACa -3'
miRNA:   3'- aGC--AGUGCuuggAGCUGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 6079 0.67 0.862094
Target:  5'- --cUCGCGAcacGCCUCGuCGCG-CAGCa -3'
miRNA:   3'- agcAGUGCU---UGGAGCuGUGCuGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.