miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 3085 0.71 0.703172
Target:  5'- gCGUCgGCGAucuucGCCUCGuu-CGACAGCGc -3'
miRNA:   3'- aGCAG-UGCU-----UGGAGCuguGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 40144 0.71 0.703172
Target:  5'- cUCGUCgGCGAGUCgaagaaaggCGACugGACGACGc -3'
miRNA:   3'- -AGCAG-UGCUUGGa--------GCUGugCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 17612 0.71 0.703172
Target:  5'- aUGUCGCGGugUUCGGCugGcaGACGa -3'
miRNA:   3'- aGCAGUGCUugGAGCUGugCugUUGC- -5'
16990 5' -50.9 NC_004333.2 + 36052 0.7 0.714159
Target:  5'- gUUGUCACGcuACCgucCGAUACGACGAg- -3'
miRNA:   3'- -AGCAGUGCu-UGGa--GCUGUGCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 13150 0.7 0.725061
Target:  5'- gCGUCACGccgaugGugUUCGGCGCGAcCGGCa -3'
miRNA:   3'- aGCAGUGC------UugGAGCUGUGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 2025 0.7 0.735866
Target:  5'- aCGUCACG-GCCgcaUCGAuCACGuCGACGc -3'
miRNA:   3'- aGCAGUGCuUGG---AGCU-GUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 9733 0.7 0.735866
Target:  5'- gCGcCACGGAUCgacaaaguUCGACGCGGCAAgCGu -3'
miRNA:   3'- aGCaGUGCUUGG--------AGCUGUGCUGUU-GC- -5'
16990 5' -50.9 NC_004333.2 + 15994 0.7 0.735866
Target:  5'- gUCGUCcUGAACCUCGGCgaguaagcGCGugGcCGg -3'
miRNA:   3'- -AGCAGuGCUUGGAGCUG--------UGCugUuGC- -5'
16990 5' -50.9 NC_004333.2 + 31160 0.7 0.735866
Target:  5'- gCGUgCACGAG--UCGAgCGCGGCGACGg -3'
miRNA:   3'- aGCA-GUGCUUggAGCU-GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 1539 0.7 0.740159
Target:  5'- aUCGUCAgCGGcACCUCGuugaacacgaagccgGC-CGACAACGu -3'
miRNA:   3'- -AGCAGU-GCU-UGGAGC---------------UGuGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 21328 0.7 0.746563
Target:  5'- gUGUUugcCGAGCg-CGACGCGACAGCa -3'
miRNA:   3'- aGCAGu--GCUUGgaGCUGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 47476 0.7 0.746563
Target:  5'- gCGcUCGCGGGCggCGGCACGAUcGCGc -3'
miRNA:   3'- aGC-AGUGCUUGgaGCUGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 36236 0.7 0.757139
Target:  5'- gCGUCGCGucauaguaGACCUCGccgagcCACGACAugcaGCGa -3'
miRNA:   3'- aGCAGUGC--------UUGGAGCu-----GUGCUGU----UGC- -5'
16990 5' -50.9 NC_004333.2 + 25596 0.7 0.757139
Target:  5'- ---aCACGAgcGCCgaugUCGugACGACGGCGg -3'
miRNA:   3'- agcaGUGCU--UGG----AGCugUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 29774 0.69 0.777877
Target:  5'- cCGuUCAUGAGCUggcgcgggUCGuuCGCGACGACGg -3'
miRNA:   3'- aGC-AGUGCUUGG--------AGCu-GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 34059 0.69 0.787009
Target:  5'- aCGaUCACGGGCCaCGACGauagcguCGACGGCa -3'
miRNA:   3'- aGC-AGUGCUUGGaGCUGU-------GCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 7480 0.69 0.792024
Target:  5'- aUCGUCACGAauuccaGCUUCGggaaaauauccuucaGCuucGCGGCGGCGg -3'
miRNA:   3'- -AGCAGUGCU------UGGAGC---------------UG---UGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27609 0.69 0.807773
Target:  5'- aCGgCGCG-ACC-CGACGCGcCGACGa -3'
miRNA:   3'- aGCaGUGCuUGGaGCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 8625 0.69 0.807773
Target:  5'- aUCGUCACGAaagucgacgucaACaUCGGCGCcGCAACc -3'
miRNA:   3'- -AGCAGUGCU------------UGgAGCUGUGcUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 7659 0.69 0.807773
Target:  5'- uUCGuUCACGAccGCUUCGACugcCGGCGAa- -3'
miRNA:   3'- -AGC-AGUGCU--UGGAGCUGu--GCUGUUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.