Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16990 | 5' | -50.9 | NC_004333.2 | + | 22815 | 0.68 | 0.844894 |
Target: 5'- uUCGUCGCGcuguCgCUCGugAaCGugAGCGa -3' miRNA: 3'- -AGCAGUGCuu--G-GAGCugU-GCugUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 41551 | 0.68 | 0.826761 |
Target: 5'- gCGUCGCGAugCUCacGAC-CGGCuucAACGc -3' miRNA: 3'- aGCAGUGCUugGAG--CUGuGCUG---UUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 2025 | 0.7 | 0.735866 |
Target: 5'- aCGUCACG-GCCgcaUCGAuCACGuCGACGc -3' miRNA: 3'- aGCAGUGCuUGG---AGCU-GUGCuGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 23741 | 0.73 | 0.54688 |
Target: 5'- gUCGUaACGGGCagCUCGACGCG-CGACGa -3' miRNA: 3'- -AGCAgUGCUUG--GAGCUGUGCuGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 46929 | 0.66 | 0.900589 |
Target: 5'- gCGcCGCGaAGCCUCG-CGCG-CAGCc -3' miRNA: 3'- aGCaGUGC-UUGGAGCuGUGCuGUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 12280 | 0.67 | 0.862094 |
Target: 5'- aCGUaCACGGcACCggCGGCGCGcauuGCGGCGu -3' miRNA: 3'- aGCA-GUGCU-UGGa-GCUGUGC----UGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 27405 | 0.69 | 0.807773 |
Target: 5'- cCGUCAUGuuuGCCguaacccuGCGCGGCGACGg -3' miRNA: 3'- aGCAGUGCu--UGGagc-----UGUGCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 115 | 0.75 | 0.461954 |
Target: 5'- gUCGUguCGAGgUUCGugACGACGAUGa -3' miRNA: 3'- -AGCAguGCUUgGAGCugUGCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 12963 | 0.68 | 0.853615 |
Target: 5'- gUUGUCGCGAuacgguugaucAgCUCGGCGCGcauCGACa -3' miRNA: 3'- -AGCAGUGCU-----------UgGAGCUGUGCu--GUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 11903 | 0.77 | 0.375428 |
Target: 5'- gUCGUCGCG-GCC-CGGCAUGcGCAGCGg -3' miRNA: 3'- -AGCAGUGCuUGGaGCUGUGC-UGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 8962 | 0.68 | 0.826761 |
Target: 5'- gCGUgCGCGGGCUggaUCGugggccguGCGCGGCGGCGa -3' miRNA: 3'- aGCA-GUGCUUGG---AGC--------UGUGCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 2780 | 0.68 | 0.848411 |
Target: 5'- uUCGUCACGAccgugaagcgguugcGCagggcaUCGuACGCGACcACGa -3' miRNA: 3'- -AGCAGUGCU---------------UGg-----AGC-UGUGCUGuUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 7480 | 0.69 | 0.792024 |
Target: 5'- aUCGUCACGAauuccaGCUUCGggaaaauauccuucaGCuucGCGGCGGCGg -3' miRNA: 3'- -AGCAGUGCU------UGGAGC---------------UG---UGCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 1539 | 0.7 | 0.740159 |
Target: 5'- aUCGUCAgCGGcACCUCGuugaacacgaagccgGC-CGACAACGu -3' miRNA: 3'- -AGCAGU-GCU-UGGAGC---------------UGuGCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 14539 | 0.71 | 0.65862 |
Target: 5'- aCGcgCACGAACUguuUCGGCAguuCGGCAACGc -3' miRNA: 3'- aGCa-GUGCUUGG---AGCUGU---GCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 38931 | 0.73 | 0.580065 |
Target: 5'- aCGagACGAACCaCGACGCGAcCGGCa -3' miRNA: 3'- aGCagUGCUUGGaGCUGUGCU-GUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 9567 | 0.66 | 0.919746 |
Target: 5'- aUCGUgGCGAguucguugccgccACCUucagcgccagcCGGCGCGGCAuCGg -3' miRNA: 3'- -AGCAgUGCU-------------UGGA-----------GCUGUGCUGUuGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 2101 | 0.66 | 0.900589 |
Target: 5'- gUUGUaCGCGAGCaucgccucgaaCUCGGCGCGuuGCAACu -3' miRNA: 3'- -AGCA-GUGCUUG-----------GAGCUGUGC--UGUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 27676 | 0.67 | 0.893431 |
Target: 5'- -aGUCGCGcACCUgaACGCGcuGCAGCGa -3' miRNA: 3'- agCAGUGCuUGGAgcUGUGC--UGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 38900 | 0.67 | 0.870322 |
Target: 5'- cCGcuUCGCGcugaUCGGCACGGCAACa -3' miRNA: 3'- aGC--AGUGCuuggAGCUGUGCUGUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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