miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 6764 0.77 0.355139
Target:  5'- -gGUCGCGcGCCUCGAgguagccgaucgcaUACGACAGCGc -3'
miRNA:   3'- agCAGUGCuUGGAGCU--------------GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27405 0.69 0.807773
Target:  5'- cCGUCAUGuuuGCCguaacccuGCGCGGCGACGg -3'
miRNA:   3'- aGCAGUGCu--UGGagc-----UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 41551 0.68 0.826761
Target:  5'- gCGUCGCGAugCUCacGAC-CGGCuucAACGc -3'
miRNA:   3'- aGCAGUGCUugGAG--CUGuGCUG---UUGC- -5'
16990 5' -50.9 NC_004333.2 + 30934 0.66 0.93211
Target:  5'- aUCG-CACGAucacguCCggCGAUACGcCGGCGg -3'
miRNA:   3'- -AGCaGUGCUu-----GGa-GCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 38931 0.73 0.580065
Target:  5'- aCGagACGAACCaCGACGCGAcCGGCa -3'
miRNA:   3'- aGCagUGCUUGGaGCUGUGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 43575 0.72 0.613653
Target:  5'- gUGUCGCGcgcucGCCUCGAaCGCGAguGCGc -3'
miRNA:   3'- aGCAGUGCu----UGGAGCU-GUGCUguUGC- -5'
16990 5' -50.9 NC_004333.2 + 14539 0.71 0.65862
Target:  5'- aCGcgCACGAACUguuUCGGCAguuCGGCAACGc -3'
miRNA:   3'- aGCa-GUGCUUGG---AGCUGU---GCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 3085 0.71 0.703172
Target:  5'- gCGUCgGCGAucuucGCCUCGuu-CGACAGCGc -3'
miRNA:   3'- aGCAG-UGCU-----UGGAGCuguGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 1539 0.7 0.740159
Target:  5'- aUCGUCAgCGGcACCUCGuugaacacgaagccgGC-CGACAACGu -3'
miRNA:   3'- -AGCAGU-GCU-UGGAGC---------------UGuGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 25296 0.69 0.807773
Target:  5'- gCGUCGC-AACCgggcCGACGcCGGCGACu -3'
miRNA:   3'- aGCAGUGcUUGGa---GCUGU-GCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 29774 0.69 0.777877
Target:  5'- cCGuUCAUGAGCUggcgcgggUCGuuCGCGACGACGg -3'
miRNA:   3'- aGC-AGUGCUUGG--------AGCu-GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 2025 0.7 0.735866
Target:  5'- aCGUCACG-GCCgcaUCGAuCACGuCGACGc -3'
miRNA:   3'- aGCAGUGCuUGG---AGCU-GUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 11903 0.77 0.375428
Target:  5'- gUCGUCGCG-GCC-CGGCAUGcGCAGCGg -3'
miRNA:   3'- -AGCAGUGCuUGGaGCUGUGC-UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 7480 0.69 0.792024
Target:  5'- aUCGUCACGAauuccaGCUUCGggaaaauauccuucaGCuucGCGGCGGCGg -3'
miRNA:   3'- -AGCAGUGCU------UGGAGC---------------UG---UGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 115 0.75 0.461954
Target:  5'- gUCGUguCGAGgUUCGugACGACGAUGa -3'
miRNA:   3'- -AGCAguGCUUgGAGCugUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 36052 0.7 0.714159
Target:  5'- gUUGUCACGcuACCgucCGAUACGACGAg- -3'
miRNA:   3'- -AGCAGUGCu-UGGa--GCUGUGCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 7659 0.69 0.807773
Target:  5'- uUCGuUCACGAccGCUUCGACugcCGGCGAa- -3'
miRNA:   3'- -AGC-AGUGCU--UGGAGCUGu--GCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 8962 0.68 0.826761
Target:  5'- gCGUgCGCGGGCUggaUCGugggccguGCGCGGCGGCGa -3'
miRNA:   3'- aGCA-GUGCUUGG---AGC--------UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 23741 0.73 0.54688
Target:  5'- gUCGUaACGGGCagCUCGACGCG-CGACGa -3'
miRNA:   3'- -AGCAgUGCUUG--GAGCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 28233 0.72 0.624895
Target:  5'- gCGUCACGGugACCgUGACGCGcgcGCGGCGc -3'
miRNA:   3'- aGCAGUGCU--UGGaGCUGUGC---UGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.