miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 115 0.75 0.461954
Target:  5'- gUCGUguCGAGgUUCGugACGACGAUGa -3'
miRNA:   3'- -AGCAguGCUUgGAGCugUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 268 0.67 0.878293
Target:  5'- gUCGUCACGccGCCgagcaCGGuCACGGuCGACGu -3'
miRNA:   3'- -AGCAGUGCu-UGGa----GCU-GUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 977 0.77 0.38449
Target:  5'- cCGUCGCGGcgacuuguGCCUCugcuGCGCGGCAGCGc -3'
miRNA:   3'- aGCAGUGCU--------UGGAGc---UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 1539 0.7 0.740159
Target:  5'- aUCGUCAgCGGcACCUCGuugaacacgaagccgGC-CGACAACGu -3'
miRNA:   3'- -AGCAGU-GCU-UGGAGC---------------UGuGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 2025 0.7 0.735866
Target:  5'- aCGUCACG-GCCgcaUCGAuCACGuCGACGc -3'
miRNA:   3'- aGCAGUGCuUGG---AGCU-GUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 2101 0.66 0.900589
Target:  5'- gUUGUaCGCGAGCaucgccucgaaCUCGGCGCGuuGCAACu -3'
miRNA:   3'- -AGCA-GUGCUUG-----------GAGCUGUGC--UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 2780 0.68 0.848411
Target:  5'- uUCGUCACGAccgugaagcgguugcGCagggcaUCGuACGCGACcACGa -3'
miRNA:   3'- -AGCAGUGCU---------------UGg-----AGC-UGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 2971 0.66 0.920364
Target:  5'- aCGUgGcCGGGCUUCGugGCgcgGACAGCu -3'
miRNA:   3'- aGCAgU-GCUUGGAGCugUG---CUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 3027 0.68 0.853615
Target:  5'- gCG-CGCGAACUUCaGAUcguACGGCAGCu -3'
miRNA:   3'- aGCaGUGCUUGGAG-CUG---UGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 3085 0.71 0.703172
Target:  5'- gCGUCgGCGAucuucGCCUCGuu-CGACAGCGc -3'
miRNA:   3'- aGCAG-UGCU-----UGGAGCuguGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 6079 0.67 0.862094
Target:  5'- --cUCGCGAcacGCCUCGuCGCG-CAGCa -3'
miRNA:   3'- agcAGUGCU---UGGAGCuGUGCuGUUGc -5'
16990 5' -50.9 NC_004333.2 + 6115 0.66 0.907466
Target:  5'- cUCGUCGUGAAUCUCG-UACGAgucgcuuuCGGCGa -3'
miRNA:   3'- -AGCAGUGCUUGGAGCuGUGCU--------GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 6764 0.77 0.355139
Target:  5'- -gGUCGCGcGCCUCGAgguagccgaucgcaUACGACAGCGc -3'
miRNA:   3'- agCAGUGCuUGGAGCU--------------GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 7480 0.69 0.792024
Target:  5'- aUCGUCACGAauuccaGCUUCGggaaaauauccuucaGCuucGCGGCGGCGg -3'
miRNA:   3'- -AGCAGUGCU------UGGAGC---------------UG---UGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 7659 0.69 0.807773
Target:  5'- uUCGuUCACGAccGCUUCGACugcCGGCGAa- -3'
miRNA:   3'- -AGC-AGUGCU--UGGAGCUGu--GCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 7702 0.68 0.835939
Target:  5'- gUCGUaGCGGugaUCGGCGCGgACAGCGa -3'
miRNA:   3'- -AGCAgUGCUuggAGCUGUGC-UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 8336 0.66 0.900589
Target:  5'- uUCGUCuuGAAcacuuCCUgGAuCACGGCAGCc -3'
miRNA:   3'- -AGCAGugCUU-----GGAgCU-GUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 8625 0.69 0.807773
Target:  5'- aUCGUCACGAaagucgacgucaACaUCGGCGCcGCAACc -3'
miRNA:   3'- -AGCAGUGCU------------UGgAGCUGUGcUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 8962 0.68 0.826761
Target:  5'- gCGUgCGCGGGCUggaUCGugggccguGCGCGGCGGCGa -3'
miRNA:   3'- aGCA-GUGCUUGG---AGC--------UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 9567 0.66 0.919746
Target:  5'- aUCGUgGCGAguucguugccgccACCUucagcgccagcCGGCGCGGCAuCGg -3'
miRNA:   3'- -AGCAgUGCU-------------UGGA-----------GCUGUGCUGUuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.