miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 41403 0.66 0.93211
Target:  5'- gUCGUaUGCGAucggcuACCUCGAgGCGcGCGACc -3'
miRNA:   3'- -AGCA-GUGCU------UGGAGCUgUGC-UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 6115 0.66 0.907466
Target:  5'- cUCGUCGUGAAUCUCG-UACGAgucgcuuuCGGCGa -3'
miRNA:   3'- -AGCAGUGCUUGGAGCuGUGCU--------GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 39057 0.66 0.907466
Target:  5'- gCGUUACGug-CUCGGCGgCGACAuuGCGc -3'
miRNA:   3'- aGCAGUGCuugGAGCUGU-GCUGU--UGC- -5'
16990 5' -50.9 NC_004333.2 + 46137 0.66 0.900589
Target:  5'- aUCG-CGCGGGCgUCGACGUGAuCGAUGc -3'
miRNA:   3'- -AGCaGUGCUUGgAGCUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 10627 0.66 0.900589
Target:  5'- gCGUCgGCGAGCUgacGCACGAgCAGCGc -3'
miRNA:   3'- aGCAG-UGCUUGGagcUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 8336 0.66 0.900589
Target:  5'- uUCGUCuuGAAcacuuCCUgGAuCACGGCAGCc -3'
miRNA:   3'- -AGCAGugCUU-----GGAgCU-GUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 46929 0.66 0.900589
Target:  5'- gCGcCGCGaAGCCUCG-CGCG-CAGCc -3'
miRNA:   3'- aGCaGUGC-UUGGAGCuGUGCuGUUGc -5'
16990 5' -50.9 NC_004333.2 + 2101 0.66 0.900589
Target:  5'- gUUGUaCGCGAGCaucgccucgaaCUCGGCGCGuuGCAACu -3'
miRNA:   3'- -AGCA-GUGCUUG-----------GAGCUGUGC--UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 27287 0.66 0.907466
Target:  5'- gUCGcCACGAGCCggCGAaacCGAUGAUGc -3'
miRNA:   3'- -AGCaGUGCUUGGa-GCUgu-GCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 14170 0.66 0.907466
Target:  5'- -aGUCGCGAuCCaaaacaacacaaUCGGCACGuGCGACc -3'
miRNA:   3'- agCAGUGCUuGG------------AGCUGUGC-UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 12106 0.66 0.910137
Target:  5'- gCGUCACGGGCCagcUCGucguaucggacgguaGCGUGACAACc -3'
miRNA:   3'- aGCAGUGCUUGG---AGC---------------UGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 36628 0.66 0.913412
Target:  5'- gCGUCugcgcaacGCGGGCUUCGACAucaagcuCGACAugACGc -3'
miRNA:   3'- aGCAG--------UGCUUGGAGCUGU-------GCUGU--UGC- -5'
16990 5' -50.9 NC_004333.2 + 39601 0.66 0.93211
Target:  5'- aUCGUCGCGuAUCU-GGCugaauuCGGCAACa -3'
miRNA:   3'- -AGCAGUGCuUGGAgCUGu-----GCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 32365 0.66 0.93211
Target:  5'- aCGUgCGCaGGCgUCGGCGCGAUcgAACGc -3'
miRNA:   3'- aGCA-GUGcUUGgAGCUGUGCUG--UUGC- -5'
16990 5' -50.9 NC_004333.2 + 25361 0.66 0.926382
Target:  5'- aCGuUCACGAGCgaCaGCGCGACGAa- -3'
miRNA:   3'- aGC-AGUGCUUGgaGcUGUGCUGUUgc -5'
16990 5' -50.9 NC_004333.2 + 2971 0.66 0.920364
Target:  5'- aCGUgGcCGGGCUUCGugGCgcgGACAGCu -3'
miRNA:   3'- aGCAgU-GCUUGGAGCugUG---CUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 19410 0.66 0.914058
Target:  5'- cCGcCGCGAcCCgcgcggUCGACGCGGCGcucGCGc -3'
miRNA:   3'- aGCaGUGCUuGG------AGCUGUGCUGU---UGC- -5'
16990 5' -50.9 NC_004333.2 + 12067 0.66 0.914058
Target:  5'- cCGUCGCcAACCUugcguacguggcUGGCGCG-CAGCGc -3'
miRNA:   3'- aGCAGUGcUUGGA------------GCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 24932 0.66 0.914058
Target:  5'- -gGUCACGAACa---ACACGACcGCGc -3'
miRNA:   3'- agCAGUGCUUGgagcUGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 15761 0.66 0.914058
Target:  5'- cUCGUCAgCGAGCUgcgcgaGGCGCGGgcCGACa -3'
miRNA:   3'- -AGCAGU-GCUUGGag----CUGUGCU--GUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.