miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 48063 1.11 0.002229
Target:  5'- gUCGUCACGAACCUCGACACGACAACGg -3'
miRNA:   3'- -AGCAGUGCUUGGAGCUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 6764 0.77 0.355139
Target:  5'- -gGUCGCGcGCCUCGAgguagccgaucgcaUACGACAGCGc -3'
miRNA:   3'- agCAGUGCuUGGAGCU--------------GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 977 0.77 0.38449
Target:  5'- cCGUCGCGGcgacuuguGCCUCugcuGCGCGGCAGCGc -3'
miRNA:   3'- aGCAGUGCU--------UGGAGc---UGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 11903 0.77 0.375428
Target:  5'- gUCGUCGCG-GCC-CGGCAUGcGCAGCGg -3'
miRNA:   3'- -AGCAGUGCuUGGaGCUGUGC-UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 22968 0.76 0.422155
Target:  5'- gCGUCGCGGGCgUCGACGuCGagucgcGCAGCGa -3'
miRNA:   3'- aGCAGUGCUUGgAGCUGU-GC------UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 17257 0.76 0.422155
Target:  5'- aUCGUCGCGAugaaggcaaGCgUCGACGCGcuCGACGc -3'
miRNA:   3'- -AGCAGUGCU---------UGgAGCUGUGCu-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 115 0.75 0.461954
Target:  5'- gUCGUguCGAGgUUCGugACGACGAUGa -3'
miRNA:   3'- -AGCAguGCUUgGAGCugUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 45411 0.75 0.441801
Target:  5'- gUCGUgACGAACgCgacCGGCACGGCGGCc -3'
miRNA:   3'- -AGCAgUGCUUG-Ga--GCUGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 38931 0.73 0.580065
Target:  5'- aCGagACGAACCaCGACGCGAcCGGCa -3'
miRNA:   3'- aGCagUGCUUGGaGCUGUGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 21538 0.73 0.557882
Target:  5'- aCGcUCACGAGCggCGGUGCGACAACGa -3'
miRNA:   3'- aGC-AGUGCUUGgaGCUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 23741 0.73 0.54688
Target:  5'- gUCGUaACGGGCagCUCGACGCG-CGACGa -3'
miRNA:   3'- -AGCAgUGCUUG--GAGCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 28233 0.72 0.624895
Target:  5'- gCGUCACGGugACCgUGACGCGcgcGCGGCGc -3'
miRNA:   3'- aGCAGUGCU--UGGaGCUGUGC---UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 43575 0.72 0.613653
Target:  5'- gUGUCGCGcgcucGCCUCGAaCGCGAguGCGc -3'
miRNA:   3'- aGCAGUGCu----UGGAGCU-GUGCUguUGC- -5'
16990 5' -50.9 NC_004333.2 + 9795 0.72 0.624895
Target:  5'- gCGUCACGccggcgcACC-CGACacGCGACAGCGc -3'
miRNA:   3'- aGCAGUGCu------UGGaGCUG--UGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 20938 0.71 0.692113
Target:  5'- gCGUCgGCGcaggcaGACgCUCGAuCACGACGGCGa -3'
miRNA:   3'- aGCAG-UGC------UUG-GAGCU-GUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 25781 0.71 0.692113
Target:  5'- gCGcCGCGaAGCCUCGACcUGGCAgACGg -3'
miRNA:   3'- aGCaGUGC-UUGGAGCUGuGCUGU-UGC- -5'
16990 5' -50.9 NC_004333.2 + 17612 0.71 0.703172
Target:  5'- aUGUCGCGGugUUCGGCugGcaGACGa -3'
miRNA:   3'- aGCAGUGCUugGAGCUGugCugUUGC- -5'
16990 5' -50.9 NC_004333.2 + 47047 0.71 0.655253
Target:  5'- aCGUCGCGcgcagcacggcaccGACUUCGcGCGCGACuGCGa -3'
miRNA:   3'- aGCAGUGC--------------UUGGAGC-UGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 40144 0.71 0.703172
Target:  5'- cUCGUCgGCGAGUCgaagaaaggCGACugGACGACGc -3'
miRNA:   3'- -AGCAG-UGCUUGGa--------GCUGugCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 27648 0.71 0.669826
Target:  5'- aUGUUACaGGCCgccagcgagCGGCGCGGCGGCGg -3'
miRNA:   3'- aGCAGUGcUUGGa--------GCUGUGCUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.