miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 9733 0.7 0.735866
Target:  5'- gCGcCACGGAUCgacaaaguUCGACGCGGCAAgCGu -3'
miRNA:   3'- aGCaGUGCUUGG--------AGCUGUGCUGUU-GC- -5'
16990 5' -50.9 NC_004333.2 + 9795 0.72 0.624895
Target:  5'- gCGUCACGccggcgcACC-CGACacGCGACAGCGc -3'
miRNA:   3'- aGCAGUGCu------UGGaGCUG--UGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 10627 0.66 0.900589
Target:  5'- gCGUCgGCGAGCUgacGCACGAgCAGCGc -3'
miRNA:   3'- aGCAG-UGCUUGGagcUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 10828 0.67 0.885998
Target:  5'- aCGUCGCGuAGCCagggCGACGCaGAUucgAGCGc -3'
miRNA:   3'- aGCAGUGC-UUGGa---GCUGUG-CUG---UUGC- -5'
16990 5' -50.9 NC_004333.2 + 10972 0.67 0.893431
Target:  5'- gCGUCGCGcggaaCUCGGCACcGGCGcGCGu -3'
miRNA:   3'- aGCAGUGCuug--GAGCUGUG-CUGU-UGC- -5'
16990 5' -50.9 NC_004333.2 + 11812 0.66 0.93211
Target:  5'- aCGaCGCG-GCCaUCaGCGCGACGGCGc -3'
miRNA:   3'- aGCaGUGCuUGG-AGcUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 11903 0.77 0.375428
Target:  5'- gUCGUCGCG-GCC-CGGCAUGcGCAGCGg -3'
miRNA:   3'- -AGCAGUGCuUGGaGCUGUGC-UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 12067 0.66 0.914058
Target:  5'- cCGUCGCcAACCUugcguacguggcUGGCGCG-CAGCGc -3'
miRNA:   3'- aGCAGUGcUUGGA------------GCUGUGCuGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 12106 0.66 0.910137
Target:  5'- gCGUCACGGGCCagcUCGucguaucggacgguaGCGUGACAACc -3'
miRNA:   3'- aGCAGUGCUUGG---AGC---------------UGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 12280 0.67 0.862094
Target:  5'- aCGUaCACGGcACCggCGGCGCGcauuGCGGCGu -3'
miRNA:   3'- aGCA-GUGCU-UGGa-GCUGUGC----UGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 12963 0.68 0.853615
Target:  5'- gUUGUCGCGAuacgguugaucAgCUCGGCGCGcauCGACa -3'
miRNA:   3'- -AGCAGUGCU-----------UgGAGCUGUGCu--GUUGc -5'
16990 5' -50.9 NC_004333.2 + 13150 0.7 0.725061
Target:  5'- gCGUCACGccgaugGugUUCGGCGCGAcCGGCa -3'
miRNA:   3'- aGCAGUGC------UugGAGCUGUGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 13356 0.66 0.920364
Target:  5'- aCGgugUACGGGCg-CGGCACGAgCGGCGu -3'
miRNA:   3'- aGCa--GUGCUUGgaGCUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 14170 0.66 0.907466
Target:  5'- -aGUCGCGAuCCaaaacaacacaaUCGGCACGuGCGACc -3'
miRNA:   3'- agCAGUGCUuGG------------AGCUGUGC-UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 14539 0.71 0.65862
Target:  5'- aCGcgCACGAACUguuUCGGCAguuCGGCAACGc -3'
miRNA:   3'- aGCa-GUGCUUGG---AGCUGU---GCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 15761 0.66 0.914058
Target:  5'- cUCGUCAgCGAGCUgcgcgaGGCGCGGgcCGACa -3'
miRNA:   3'- -AGCAGU-GCUUGGag----CUGUGCU--GUUGc -5'
16990 5' -50.9 NC_004333.2 + 15994 0.7 0.735866
Target:  5'- gUCGUCcUGAACCUCGGCgaguaagcGCGugGcCGg -3'
miRNA:   3'- -AGCAGuGCUUGGAGCUG--------UGCugUuGC- -5'
16990 5' -50.9 NC_004333.2 + 16649 0.67 0.875929
Target:  5'- aUCGUCgACGAACUggUCGugACGcucgaacuagacgcGCGACa -3'
miRNA:   3'- -AGCAG-UGCUUGG--AGCugUGC--------------UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 17257 0.76 0.422155
Target:  5'- aUCGUCGCGAugaaggcaaGCgUCGACGCGcuCGACGc -3'
miRNA:   3'- -AGCAGUGCU---------UGgAGCUGUGCu-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 17612 0.71 0.703172
Target:  5'- aUGUCGCGGugUUCGGCugGcaGACGa -3'
miRNA:   3'- aGCAGUGCUugGAGCUGugCugUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.