miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16990 5' -50.9 NC_004333.2 + 48063 1.11 0.002229
Target:  5'- gUCGUCACGAACCUCGACACGACAACGg -3'
miRNA:   3'- -AGCAGUGCUUGGAGCUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 47923 0.68 0.853615
Target:  5'- gCGUgACGAccacAUCgaaCGGCACGGCGugGg -3'
miRNA:   3'- aGCAgUGCU----UGGa--GCUGUGCUGUugC- -5'
16990 5' -50.9 NC_004333.2 + 47476 0.7 0.746563
Target:  5'- gCGcUCGCGGGCggCGGCACGAUcGCGc -3'
miRNA:   3'- aGC-AGUGCUUGgaGCUGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 47047 0.71 0.655253
Target:  5'- aCGUCGCGcgcagcacggcaccGACUUCGcGCGCGACuGCGa -3'
miRNA:   3'- aGCAGUGC--------------UUGGAGC-UGUGCUGuUGC- -5'
16990 5' -50.9 NC_004333.2 + 46929 0.66 0.900589
Target:  5'- gCGcCGCGaAGCCUCG-CGCG-CAGCc -3'
miRNA:   3'- aGCaGUGC-UUGGAGCuGUGCuGUUGc -5'
16990 5' -50.9 NC_004333.2 + 46137 0.66 0.900589
Target:  5'- aUCG-CGCGGGCgUCGACGUGAuCGAUGc -3'
miRNA:   3'- -AGCaGUGCUUGgAGCUGUGCU-GUUGC- -5'
16990 5' -50.9 NC_004333.2 + 45676 0.67 0.893431
Target:  5'- aCGUCGCGcccGAUCUCGA---GGCAGCGu -3'
miRNA:   3'- aGCAGUGC---UUGGAGCUgugCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 45411 0.75 0.441801
Target:  5'- gUCGUgACGAACgCgacCGGCACGGCGGCc -3'
miRNA:   3'- -AGCAgUGCUUG-Ga--GCUGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 44315 0.67 0.878293
Target:  5'- --aUUugGAACCUCGuucUGCGGCGGCa -3'
miRNA:   3'- agcAGugCUUGGAGCu--GUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 43575 0.72 0.613653
Target:  5'- gUGUCGCGcgcucGCCUCGAaCGCGAguGCGc -3'
miRNA:   3'- aGCAGUGCu----UGGAGCU-GUGCUguUGC- -5'
16990 5' -50.9 NC_004333.2 + 41810 0.68 0.853615
Target:  5'- -gGUCAagcuGCCcgaCGGCACGACGGCGc -3'
miRNA:   3'- agCAGUgcu-UGGa--GCUGUGCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 41551 0.68 0.826761
Target:  5'- gCGUCGCGAugCUCacGAC-CGGCuucAACGc -3'
miRNA:   3'- aGCAGUGCUugGAG--CUGuGCUG---UUGC- -5'
16990 5' -50.9 NC_004333.2 + 41403 0.66 0.93211
Target:  5'- gUCGUaUGCGAucggcuACCUCGAgGCGcGCGACc -3'
miRNA:   3'- -AGCA-GUGCU------UGGAGCUgUGC-UGUUGc -5'
16990 5' -50.9 NC_004333.2 + 40144 0.71 0.703172
Target:  5'- cUCGUCgGCGAGUCgaagaaaggCGACugGACGACGc -3'
miRNA:   3'- -AGCAG-UGCUUGGa--------GCUGugCUGUUGC- -5'
16990 5' -50.9 NC_004333.2 + 39601 0.66 0.93211
Target:  5'- aUCGUCGCGuAUCU-GGCugaauuCGGCAACa -3'
miRNA:   3'- -AGCAGUGCuUGGAgCUGu-----GCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 39057 0.66 0.907466
Target:  5'- gCGUUACGug-CUCGGCGgCGACAuuGCGc -3'
miRNA:   3'- aGCAGUGCuugGAGCUGU-GCUGU--UGC- -5'
16990 5' -50.9 NC_004333.2 + 38931 0.73 0.580065
Target:  5'- aCGagACGAACCaCGACGCGAcCGGCa -3'
miRNA:   3'- aGCagUGCUUGGaGCUGUGCU-GUUGc -5'
16990 5' -50.9 NC_004333.2 + 38900 0.67 0.870322
Target:  5'- cCGcuUCGCGcugaUCGGCACGGCAACa -3'
miRNA:   3'- aGC--AGUGCuuggAGCUGUGCUGUUGc -5'
16990 5' -50.9 NC_004333.2 + 36628 0.66 0.913412
Target:  5'- gCGUCugcgcaacGCGGGCUUCGACAucaagcuCGACAugACGc -3'
miRNA:   3'- aGCAG--------UGCUUGGAGCUGU-------GCUGU--UGC- -5'
16990 5' -50.9 NC_004333.2 + 36236 0.7 0.757139
Target:  5'- gCGUCGCGucauaguaGACCUCGccgagcCACGACAugcaGCGa -3'
miRNA:   3'- aGCAGUGC--------UUGGAGCu-----GUGCUGU----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.