Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16990 | 5' | -50.9 | NC_004333.2 | + | 23429 | 0.67 | 0.878293 |
Target: 5'- aUCGUCGCcgcguucguGAGCggcuuCUCGAC-CGAUGACGg -3' miRNA: 3'- -AGCAGUG---------CUUG-----GAGCUGuGCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 6115 | 0.66 | 0.907466 |
Target: 5'- cUCGUCGUGAAUCUCG-UACGAgucgcuuuCGGCGa -3' miRNA: 3'- -AGCAGUGCUUGGAGCuGUGCU--------GUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 39057 | 0.66 | 0.907466 |
Target: 5'- gCGUUACGug-CUCGGCGgCGACAuuGCGc -3' miRNA: 3'- aGCAGUGCuugGAGCUGU-GCUGU--UGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 46137 | 0.66 | 0.900589 |
Target: 5'- aUCG-CGCGGGCgUCGACGUGAuCGAUGc -3' miRNA: 3'- -AGCaGUGCUUGgAGCUGUGCU-GUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 10627 | 0.66 | 0.900589 |
Target: 5'- gCGUCgGCGAGCUgacGCACGAgCAGCGc -3' miRNA: 3'- aGCAG-UGCUUGGagcUGUGCU-GUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 8336 | 0.66 | 0.900589 |
Target: 5'- uUCGUCuuGAAcacuuCCUgGAuCACGGCAGCc -3' miRNA: 3'- -AGCAGugCUU-----GGAgCU-GUGCUGUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 45676 | 0.67 | 0.893431 |
Target: 5'- aCGUCGCGcccGAUCUCGA---GGCAGCGu -3' miRNA: 3'- aGCAGUGC---UUGGAGCUgugCUGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 10972 | 0.67 | 0.893431 |
Target: 5'- gCGUCGCGcggaaCUCGGCACcGGCGcGCGu -3' miRNA: 3'- aGCAGUGCuug--GAGCUGUG-CUGU-UGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 10828 | 0.67 | 0.885998 |
Target: 5'- aCGUCGCGuAGCCagggCGACGCaGAUucgAGCGc -3' miRNA: 3'- aGCAGUGC-UUGGa---GCUGUG-CUG---UUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 14170 | 0.66 | 0.907466 |
Target: 5'- -aGUCGCGAuCCaaaacaacacaaUCGGCACGuGCGACc -3' miRNA: 3'- agCAGUGCUuGG------------AGCUGUGC-UGUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 12106 | 0.66 | 0.910137 |
Target: 5'- gCGUCACGGGCCagcUCGucguaucggacgguaGCGUGACAACc -3' miRNA: 3'- aGCAGUGCUUGG---AGC---------------UGUGCUGUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 36628 | 0.66 | 0.913412 |
Target: 5'- gCGUCugcgcaacGCGGGCUUCGACAucaagcuCGACAugACGc -3' miRNA: 3'- aGCAG--------UGCUUGGAGCUGU-------GCUGU--UGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 39601 | 0.66 | 0.93211 |
Target: 5'- aUCGUCGCGuAUCU-GGCugaauuCGGCAACa -3' miRNA: 3'- -AGCAGUGCuUGGAgCUGu-----GCUGUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 32365 | 0.66 | 0.93211 |
Target: 5'- aCGUgCGCaGGCgUCGGCGCGAUcgAACGc -3' miRNA: 3'- aGCA-GUGcUUGgAGCUGUGCUG--UUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 25361 | 0.66 | 0.926382 |
Target: 5'- aCGuUCACGAGCgaCaGCGCGACGAa- -3' miRNA: 3'- aGC-AGUGCUUGgaGcUGUGCUGUUgc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 2971 | 0.66 | 0.920364 |
Target: 5'- aCGUgGcCGGGCUUCGugGCgcgGACAGCu -3' miRNA: 3'- aGCAgU-GCUUGGAGCugUG---CUGUUGc -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 19410 | 0.66 | 0.914058 |
Target: 5'- cCGcCGCGAcCCgcgcggUCGACGCGGCGcucGCGc -3' miRNA: 3'- aGCaGUGCUuGG------AGCUGUGCUGU---UGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 12067 | 0.66 | 0.914058 |
Target: 5'- cCGUCGCcAACCUugcguacguggcUGGCGCG-CAGCGc -3' miRNA: 3'- aGCAGUGcUUGGA------------GCUGUGCuGUUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 24932 | 0.66 | 0.914058 |
Target: 5'- -gGUCACGAACa---ACACGACcGCGc -3' miRNA: 3'- agCAGUGCUUGgagcUGUGCUGuUGC- -5' |
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16990 | 5' | -50.9 | NC_004333.2 | + | 15761 | 0.66 | 0.914058 |
Target: 5'- cUCGUCAgCGAGCUgcgcgaGGCGCGGgcCGACa -3' miRNA: 3'- -AGCAGU-GCUUGGag----CUGUGCU--GUUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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