miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 27194 0.67 0.770598
Target:  5'- gGUGUGGCGGCagaccguGCuUCGcGCGGUACa -3'
miRNA:   3'- -CGCACUGCUGg------UGuAGCuUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 6732 0.67 0.770598
Target:  5'- ---cGACGGCCgacucgcccGCGUCGAGCaGCGCc -3'
miRNA:   3'- cgcaCUGCUGG---------UGUAGCUUGcCGUGc -5'
16991 5' -53.3 NC_004333.2 + 43340 0.67 0.760346
Target:  5'- --aUGACGGCCAUcuggcaGAACGaGCGCGa -3'
miRNA:   3'- cgcACUGCUGGUGuag---CUUGC-CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 35489 0.67 0.760346
Target:  5'- uCGUGAUGAuCCAguUGUCGcuguuCGGCGCGg -3'
miRNA:   3'- cGCACUGCU-GGU--GUAGCuu---GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 38253 0.67 0.760346
Target:  5'- uGCGcGGCGACCuGCucguGUgGGACGGuCACGc -3'
miRNA:   3'- -CGCaCUGCUGG-UG----UAgCUUGCC-GUGC- -5'
16991 5' -53.3 NC_004333.2 + 7032 0.67 0.760346
Target:  5'- cGCGUcGAacaGACCGCAcugcgUGAGCGGaACGg -3'
miRNA:   3'- -CGCA-CUg--CUGGUGUa----GCUUGCCgUGC- -5'
16991 5' -53.3 NC_004333.2 + 41904 0.67 0.74996
Target:  5'- cGCGUGAuucUGGCCugAUgGAAcCGGacaGCGa -3'
miRNA:   3'- -CGCACU---GCUGGugUAgCUU-GCCg--UGC- -5'
16991 5' -53.3 NC_004333.2 + 27426 0.67 0.74996
Target:  5'- uGCGcGGCGACgGCuGUCGAccaGGCGCc -3'
miRNA:   3'- -CGCaCUGCUGgUG-UAGCUug-CCGUGc -5'
16991 5' -53.3 NC_004333.2 + 39737 0.67 0.74996
Target:  5'- aCGUGGUGGCCgggcagaucaACGUCG-GCGGCACc -3'
miRNA:   3'- cGCACUGCUGG----------UGUAGCuUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 14235 0.67 0.74996
Target:  5'- uGCGacGGCGugCGCGcgcgccucuuUCGAgccgagcgGCGGCACGc -3'
miRNA:   3'- -CGCa-CUGCugGUGU----------AGCU--------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 20376 0.67 0.74996
Target:  5'- uCGUGGuCGACUAC-UCG-GCGGaCACGa -3'
miRNA:   3'- cGCACU-GCUGGUGuAGCuUGCC-GUGC- -5'
16991 5' -53.3 NC_004333.2 + 20699 0.67 0.739454
Target:  5'- gGCGUGuACgGAUCGCAgaCGAaugcggugaugACGGCGCGc -3'
miRNA:   3'- -CGCAC-UG-CUGGUGUa-GCU-----------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 3850 0.67 0.739454
Target:  5'- aGCGUGuCGAaCACuucaucuUCGGACgGGCGCa -3'
miRNA:   3'- -CGCACuGCUgGUGu------AGCUUG-CCGUGc -5'
16991 5' -53.3 NC_004333.2 + 34255 0.67 0.739454
Target:  5'- gGCGgcaGCGGCCACgAUCGccACGGCAg- -3'
miRNA:   3'- -CGCac-UGCUGGUG-UAGCu-UGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 28999 0.68 0.728837
Target:  5'- cGgGUcGGCGugCGCAUCGcgcGCGGCuagcACGa -3'
miRNA:   3'- -CgCA-CUGCugGUGUAGCu--UGCCG----UGC- -5'
16991 5' -53.3 NC_004333.2 + 11976 0.68 0.718122
Target:  5'- cGCGUcGACGAUCGCGgcCGuaucGCGGUGCa -3'
miRNA:   3'- -CGCA-CUGCUGGUGUa-GCu---UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 44669 0.68 0.718122
Target:  5'- cGCGgcauCGGCacagACGUCGAAgCGGCACa -3'
miRNA:   3'- -CGCacu-GCUGg---UGUAGCUU-GCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 10004 0.68 0.718122
Target:  5'- ---cGGCGGCCAUugCGAGCGGCGu- -3'
miRNA:   3'- cgcaCUGCUGGUGuaGCUUGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 31527 0.68 0.71489
Target:  5'- aGCGUcACGACCAguuCGUCGAcgauguuugcguucGCGGCGu- -3'
miRNA:   3'- -CGCAcUGCUGGU---GUAGCU--------------UGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 26964 0.68 0.707321
Target:  5'- cGCGcGACGGCCGCccAUUG-AUGcGCACGu -3'
miRNA:   3'- -CGCaCUGCUGGUG--UAGCuUGC-CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.