miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 39499 0.66 0.804302
Target:  5'- gGCGUaacggacgacacgccGAuCGGCUAUAUCGAcaucgguuGCGGCGCc -3'
miRNA:   3'- -CGCA---------------CU-GCUGGUGUAGCU--------UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 45522 0.66 0.800439
Target:  5'- gGCGgGGCGccCCGCAuUCGAGCGGUgguggucgcuuuGCGa -3'
miRNA:   3'- -CGCaCUGCu-GGUGU-AGCUUGCCG------------UGC- -5'
16991 5' -53.3 NC_004333.2 + 30644 0.66 0.800439
Target:  5'- aUGUGcGCGAUCGCuUCGGACaGUGCGa -3'
miRNA:   3'- cGCAC-UGCUGGUGuAGCUUGcCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 38830 0.66 0.800439
Target:  5'- aGCuuugGACGACCgacACGUCGGACacguaccgGGCGCc -3'
miRNA:   3'- -CGca--CUGCUGG---UGUAGCUUG--------CCGUGc -5'
16991 5' -53.3 NC_004333.2 + 20844 0.66 0.800439
Target:  5'- aCG-GGCGGCCGCGcauccugcUCGAACGcCACa -3'
miRNA:   3'- cGCaCUGCUGGUGU--------AGCUUGCcGUGc -5'
16991 5' -53.3 NC_004333.2 + 26493 0.66 0.800439
Target:  5'- cGCGUGcCGcacGCCAuuucCGUCGAugaagucCGGCGCGc -3'
miRNA:   3'- -CGCACuGC---UGGU----GUAGCUu------GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 32948 0.66 0.800439
Target:  5'- -gGUaGGCGugCGCGUCGGGCaGCuuuGCGa -3'
miRNA:   3'- cgCA-CUGCugGUGUAGCUUGcCG---UGC- -5'
16991 5' -53.3 NC_004333.2 + 28845 0.66 0.800439
Target:  5'- uCGUGcCGGCUGCGuUCGuagcCGGCGCGc -3'
miRNA:   3'- cGCACuGCUGGUGU-AGCuu--GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 10511 0.66 0.800439
Target:  5'- ---cGACGAgCGgGUCGGGCGcGCGCu -3'
miRNA:   3'- cgcaCUGCUgGUgUAGCUUGC-CGUGc -5'
16991 5' -53.3 NC_004333.2 + 27411 0.66 0.79459
Target:  5'- gGCGUGuCGacguucaggcgcgcaGCCGCGUCGGcgauguccggcaGCGcGCGCGc -3'
miRNA:   3'- -CGCACuGC---------------UGGUGUAGCU------------UGC-CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 18425 0.66 0.790656
Target:  5'- cGCGau-CGGCgGCGUCGAcaccGCGaGCGCGu -3'
miRNA:   3'- -CGCacuGCUGgUGUAGCU----UGC-CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 11097 0.66 0.790656
Target:  5'- --aUGAuCGugCGCGaCGAacaGCGGCACGa -3'
miRNA:   3'- cgcACU-GCugGUGUaGCU---UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 27474 0.66 0.790656
Target:  5'- aGCGUGugcugaACGACCGCcgCGAuccauugcguGCGGUugauguaaGCGa -3'
miRNA:   3'- -CGCAC------UGCUGGUGuaGCU----------UGCCG--------UGC- -5'
16991 5' -53.3 NC_004333.2 + 19292 0.66 0.790656
Target:  5'- uGCGc--CGAgCGCgAUCGcGCGGCACGa -3'
miRNA:   3'- -CGCacuGCUgGUG-UAGCuUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 21814 0.66 0.787688
Target:  5'- aGCGUucgaggcauuccucGACGGCaauccCAUCGAauaccgcgacGCGGCGCGc -3'
miRNA:   3'- -CGCA--------------CUGCUGgu---GUAGCU----------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 13436 0.67 0.780705
Target:  5'- cGCG-GGCGGCguCACGUCaacuaaGGGCGGCAUc -3'
miRNA:   3'- -CGCaCUGCUG--GUGUAG------CUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 33836 0.67 0.780705
Target:  5'- cCGUGucgcGCGuCUACAUCGAagagGCGGCgaACGg -3'
miRNA:   3'- cGCAC----UGCuGGUGUAGCU----UGCCG--UGC- -5'
16991 5' -53.3 NC_004333.2 + 25804 0.67 0.780705
Target:  5'- ---aGACGGCCAUccUCGGcgcguGCGGCGCa -3'
miRNA:   3'- cgcaCUGCUGGUGu-AGCU-----UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 46894 0.67 0.780705
Target:  5'- cGCGUaACGcaACCGCGcCaGGCGGCGCGc -3'
miRNA:   3'- -CGCAcUGC--UGGUGUaGcUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 15480 0.67 0.780705
Target:  5'- gGCGUGcCGAgCGCAacagggcugcUCGcggcggucaccGGCGGCGCGu -3'
miRNA:   3'- -CGCACuGCUgGUGU----------AGC-----------UUGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.