miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 24792 0.74 0.391871
Target:  5'- gGCGUGACcGCCcuguccggACugaCGGGCGGCACGg -3'
miRNA:   3'- -CGCACUGcUGG--------UGua-GCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 9931 0.73 0.401057
Target:  5'- gGCGUG-C-AUCACGUugaCGAACGGCGCGg -3'
miRNA:   3'- -CGCACuGcUGGUGUA---GCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 23172 0.73 0.429423
Target:  5'- cCGUGGCGAUCAgCGU-GAcagGCGGCGCGg -3'
miRNA:   3'- cGCACUGCUGGU-GUAgCU---UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 34396 0.72 0.447987
Target:  5'- aGUG-GACGugagcaacuacacGCCGCG-CGAGCGGCGCGc -3'
miRNA:   3'- -CGCaCUGC-------------UGGUGUaGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 7192 0.72 0.458936
Target:  5'- uCGUcGACGAgCACgaaGUCGAACGGCcCGa -3'
miRNA:   3'- cGCA-CUGCUgGUG---UAGCUUGCCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 42324 0.72 0.458936
Target:  5'- gGCGUGGCGugCAUAaauacCGGcCGGCGCu -3'
miRNA:   3'- -CGCACUGCugGUGUa----GCUuGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 28425 0.72 0.469011
Target:  5'- aGCG-GcCGAUCGCGUCGuuGACGGCAgCGg -3'
miRNA:   3'- -CGCaCuGCUGGUGUAGC--UUGCCGU-GC- -5'
16991 5' -53.3 NC_004333.2 + 34649 0.72 0.479199
Target:  5'- gGCGgcaacgccGCGAgCACGUCGGACGGCGa- -3'
miRNA:   3'- -CGCac------UGCUgGUGUAGCUUGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 23024 0.72 0.479199
Target:  5'- aGCGUGuCGAUCggagGCAUCGGGCaGGcCGCGa -3'
miRNA:   3'- -CGCACuGCUGG----UGUAGCUUG-CC-GUGC- -5'
16991 5' -53.3 NC_004333.2 + 38464 0.72 0.48846
Target:  5'- gGCGcGACGcgaugauugcgcuGCCGCaAUgGGACGGCACGc -3'
miRNA:   3'- -CGCaCUGC-------------UGGUG-UAgCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 42017 0.72 0.489494
Target:  5'- cGCGUGaagcgcGCGGCCAa--CGAGCGGgGCGu -3'
miRNA:   3'- -CGCAC------UGCUGGUguaGCUUGCCgUGC- -5'
16991 5' -53.3 NC_004333.2 + 10420 0.72 0.489494
Target:  5'- uGCGUGACGAaacgaCGCucGUCGAucucgcGCaGGCGCGg -3'
miRNA:   3'- -CGCACUGCUg----GUG--UAGCU------UG-CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 36370 0.72 0.499892
Target:  5'- cGCGcUGAUGGCCGCGUCGuACuuGCGCu -3'
miRNA:   3'- -CGC-ACUGCUGGUGUAGCuUGc-CGUGc -5'
16991 5' -53.3 NC_004333.2 + 43313 0.71 0.510386
Target:  5'- aGCGgcGGCaGCgGCAUCGGcACGGCGCGc -3'
miRNA:   3'- -CGCa-CUGcUGgUGUAGCU-UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 29990 0.71 0.553206
Target:  5'- cGCGcacGACGAgCGCAUCaccCGGCACGc -3'
miRNA:   3'- -CGCa--CUGCUgGUGUAGcuuGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 2025 0.7 0.564087
Target:  5'- aCGUcACGGCCGCAUCGAucACGucgacgcccGCGCGa -3'
miRNA:   3'- cGCAcUGCUGGUGUAGCU--UGC---------CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 128 0.7 0.564087
Target:  5'- uCGUGACGACgAUgagauaGUCGugauuCGGCGCGa -3'
miRNA:   3'- cGCACUGCUGgUG------UAGCuu---GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 5037 0.7 0.564087
Target:  5'- gGCGgccaGGCGGCCggcuguuggccgACGUCGGcGCGGCGCu -3'
miRNA:   3'- -CGCa---CUGCUGG------------UGUAGCU-UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 33748 0.7 0.564087
Target:  5'- cGUGUGugG--CugAUCGAcugGCGGCGCGa -3'
miRNA:   3'- -CGCACugCugGugUAGCU---UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 28080 0.7 0.564087
Target:  5'- uGCGc-GCGAUCugGuucaucgugUCGAGCGGCACGc -3'
miRNA:   3'- -CGCacUGCUGGugU---------AGCUUGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.