miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 47922 1.12 0.001061
Target:  5'- gGCGUGACGACCACAUCGAACGGCACGg -3'
miRNA:   3'- -CGCACUGCUGGUGUAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 8376 0.85 0.071749
Target:  5'- cGCGUucgGACGGCCACAgcgCGAGCGGCGuCGg -3'
miRNA:   3'- -CGCA---CUGCUGGUGUa--GCUUGCCGU-GC- -5'
16991 5' -53.3 NC_004333.2 + 22755 0.8 0.168002
Target:  5'- gGCGUGACGGCCGCcgC---CGGCACGc -3'
miRNA:   3'- -CGCACUGCUGGUGuaGcuuGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 11870 0.79 0.177458
Target:  5'- cGCccGGCGACUAC-UCGGGCGGCGCGu -3'
miRNA:   3'- -CGcaCUGCUGGUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 41699 0.79 0.187383
Target:  5'- cGCG-GGCGGCaACuUCGGGCGGCACGg -3'
miRNA:   3'- -CGCaCUGCUGgUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 33296 0.78 0.214356
Target:  5'- cGCGUugcGuCGGCCGCAUCGAGCcaaccGGCGCGc -3'
miRNA:   3'- -CGCA---CuGCUGGUGUAGCUUG-----CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 42849 0.77 0.251049
Target:  5'- gGCGUGACGAUC-CAgcgCGAA-GGCGCGa -3'
miRNA:   3'- -CGCACUGCUGGuGUa--GCUUgCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 24850 0.75 0.30783
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGCACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 9897 0.75 0.323477
Target:  5'- cGCGUGcauCGAUCuCGUCGAACaGGCACu -3'
miRNA:   3'- -CGCACu--GCUGGuGUAGCUUG-CCGUGc -5'
16991 5' -53.3 NC_004333.2 + 27636 0.75 0.330709
Target:  5'- aGCGgcGCGGCCAUGUuacaggccgccagCGAGCGGCGCGg -3'
miRNA:   3'- -CGCacUGCUGGUGUA-------------GCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 39234 0.75 0.33152
Target:  5'- uGCGUGcaaugcuCGACCGCAcccCGAGCGGC-CGg -3'
miRNA:   3'- -CGCACu------GCUGGUGUa--GCUUGCCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 37424 0.75 0.345528
Target:  5'- uGCGcGGCGugCACGUguacugcggcgugaCGAACGGCGCc -3'
miRNA:   3'- -CGCaCUGCugGUGUA--------------GCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 47832 0.75 0.348043
Target:  5'- aGCGccGACGGgCAUuUCGGGCGGUACGg -3'
miRNA:   3'- -CGCa-CUGCUgGUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 35493 0.74 0.356523
Target:  5'- -gGUGAgCGuGCCGCcugCGAGCGGCACGu -3'
miRNA:   3'- cgCACU-GC-UGGUGua-GCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 23760 0.74 0.356523
Target:  5'- cGCGcGACGAgucguuCUGCG-CGAACGGCACGa -3'
miRNA:   3'- -CGCaCUGCU------GGUGUaGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 29773 0.74 0.365147
Target:  5'- cGCGaGGCGuugCGCuUCGGACGGCACGa -3'
miRNA:   3'- -CGCaCUGCug-GUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 34296 0.74 0.373914
Target:  5'- cCGUGcCGGCCGacuUCGcGCGGCGCGg -3'
miRNA:   3'- cGCACuGCUGGUgu-AGCuUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 46815 0.74 0.373914
Target:  5'- cCGUGcgcaacacgaACGugCucgGCAUCGAACGGCACa -3'
miRNA:   3'- cGCAC----------UGCugG---UGUAGCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 24792 0.74 0.391871
Target:  5'- gGCGUGACcGCCcuguccggACugaCGGGCGGCACGg -3'
miRNA:   3'- -CGCACUGcUGG--------UGua-GCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 12099 0.74 0.391871
Target:  5'- cGCGUGAaagaACC-CGUCGAacuuaccgaGCGGCACGa -3'
miRNA:   3'- -CGCACUgc--UGGuGUAGCU---------UGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.