miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 41699 0.79 0.187383
Target:  5'- cGCG-GGCGGCaACuUCGGGCGGCACGg -3'
miRNA:   3'- -CGCaCUGCUGgUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 27587 0.7 0.58601
Target:  5'- -gGUGAUGcCCgACGUCGAauagcGCGGCGCc -3'
miRNA:   3'- cgCACUGCuGG-UGUAGCU-----UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 32076 0.7 0.58601
Target:  5'- aCGcGACGAUCGCAuagaUCGGcguCGGCGCGu -3'
miRNA:   3'- cGCaCUGCUGGUGU----AGCUu--GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 8615 0.66 0.837677
Target:  5'- cGCGaUGcACGaagccgaugcGCgACGUCGAGCucGGCGCGg -3'
miRNA:   3'- -CGC-AC-UGC----------UGgUGUAGCUUG--CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 37424 0.75 0.345528
Target:  5'- uGCGcGGCGugCACGUguacugcggcgugaCGAACGGCGCc -3'
miRNA:   3'- -CGCaCUGCugGUGUA--------------GCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 35493 0.74 0.356523
Target:  5'- -gGUGAgCGuGCCGCcugCGAGCGGCACGu -3'
miRNA:   3'- cgCACU-GC-UGGUGua-GCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 46815 0.74 0.373914
Target:  5'- cCGUGcgcaacacgaACGugCucgGCAUCGAACGGCACa -3'
miRNA:   3'- cGCAC----------UGCugG---UGUAGCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 12099 0.74 0.391871
Target:  5'- cGCGUGAaagaACC-CGUCGAacuuaccgaGCGGCACGa -3'
miRNA:   3'- -CGCACUgc--UGGuGUAGCU---------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 42017 0.72 0.489494
Target:  5'- cGCGUGaagcgcGCGGCCAa--CGAGCGGgGCGu -3'
miRNA:   3'- -CGCAC------UGCUGGUguaGCUUGCCgUGC- -5'
16991 5' -53.3 NC_004333.2 + 8155 0.7 0.579414
Target:  5'- gGUGUGGCGacaggucgGCCGCGUCcaucgcguacucaguGAGCGGCGuCGa -3'
miRNA:   3'- -CGCACUGC--------UGGUGUAG---------------CUUGCCGU-GC- -5'
16991 5' -53.3 NC_004333.2 + 5037 0.7 0.564087
Target:  5'- gGCGgccaGGCGGCCggcuguuggccgACGUCGGcGCGGCGCu -3'
miRNA:   3'- -CGCa---CUGCUGG------------UGUAGCU-UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 38464 0.72 0.48846
Target:  5'- gGCGcGACGcgaugauugcgcuGCCGCaAUgGGACGGCACGc -3'
miRNA:   3'- -CGCaCUGC-------------UGGUG-UAgCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 33296 0.78 0.214356
Target:  5'- cGCGUugcGuCGGCCGCAUCGAGCcaaccGGCGCGc -3'
miRNA:   3'- -CGCA---CuGCUGGUGUAGCUUG-----CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 128 0.7 0.564087
Target:  5'- uCGUGACGACgAUgagauaGUCGugauuCGGCGCGa -3'
miRNA:   3'- cGCACUGCUGgUG------UAGCuu---GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 24850 0.75 0.30783
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGCACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 28766 0.74 0.391871
Target:  5'- cGCGU--CGACCGCgcggGUCGcGGCGGCGCGa -3'
miRNA:   3'- -CGCAcuGCUGGUG----UAGC-UUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 28080 0.7 0.564087
Target:  5'- uGCGc-GCGAUCugGuucaucgugUCGAGCGGCACGc -3'
miRNA:   3'- -CGCacUGCUGGugU---------AGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 47812 0.7 0.58601
Target:  5'- uCGUGcaGCGcGCCGCcugCGGACGGCGCu -3'
miRNA:   3'- cGCAC--UGC-UGGUGua-GCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 39234 0.75 0.33152
Target:  5'- uGCGUGcaaugcuCGACCGCAcccCGAGCGGC-CGg -3'
miRNA:   3'- -CGCACu------GCUGGUGUa--GCUUGCCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 23760 0.74 0.356523
Target:  5'- cGCGcGACGAgucguuCUGCG-CGAACGGCACGa -3'
miRNA:   3'- -CGCaCUGCU------GGUGUaGCUUGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.