miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 6732 0.67 0.770598
Target:  5'- ---cGACGGCCgacucgcccGCGUCGAGCaGCGCc -3'
miRNA:   3'- cgcaCUGCUGG---------UGUAGCUUGcCGUGc -5'
16991 5' -53.3 NC_004333.2 + 30644 0.66 0.800439
Target:  5'- aUGUGcGCGAUCGCuUCGGACaGUGCGa -3'
miRNA:   3'- cGCAC-UGCUGGUGuAGCUUGcCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 10511 0.66 0.800439
Target:  5'- ---cGACGAgCGgGUCGGGCGcGCGCu -3'
miRNA:   3'- cgcaCUGCUgGUgUAGCUUGC-CGUGc -5'
16991 5' -53.3 NC_004333.2 + 27411 0.66 0.79459
Target:  5'- gGCGUGuCGacguucaggcgcgcaGCCGCGUCGGcgauguccggcaGCGcGCGCGc -3'
miRNA:   3'- -CGCACuGC---------------UGGUGUAGCU------------UGC-CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 19292 0.66 0.790656
Target:  5'- uGCGc--CGAgCGCgAUCGcGCGGCACGa -3'
miRNA:   3'- -CGCacuGCUgGUG-UAGCuUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 46894 0.67 0.780705
Target:  5'- cGCGUaACGcaACCGCGcCaGGCGGCGCGc -3'
miRNA:   3'- -CGCAcUGC--UGGUGUaGcUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 13436 0.67 0.780705
Target:  5'- cGCG-GGCGGCguCACGUCaacuaaGGGCGGCAUc -3'
miRNA:   3'- -CGCaCUGCUG--GUGUAG------CUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 33836 0.67 0.780705
Target:  5'- cCGUGucgcGCGuCUACAUCGAagagGCGGCgaACGg -3'
miRNA:   3'- cGCAC----UGCuGGUGUAGCU----UGCCG--UGC- -5'
16991 5' -53.3 NC_004333.2 + 25804 0.67 0.780705
Target:  5'- ---aGACGGCCAUccUCGGcgcguGCGGCGCa -3'
miRNA:   3'- cgcaCUGCUGGUGu-AGCU-----UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 3141 0.66 0.807181
Target:  5'- aGCGUuuGCGcGCCGCcagcgccacgcgcgGUCGAGCGGC-CGg -3'
miRNA:   3'- -CGCAc-UGC-UGGUG--------------UAGCUUGCCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 43844 0.66 0.810043
Target:  5'- -aGUGAaucUGcACgACAUCGuacGCGGCGCGa -3'
miRNA:   3'- cgCACU---GC-UGgUGUAGCu--UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 21503 0.66 0.810043
Target:  5'- --cUGGCGACCugAcgcuaUCGGcagcCGGCGCGa -3'
miRNA:   3'- cgcACUGCUGGugU-----AGCUu---GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 21584 0.66 0.837677
Target:  5'- uCGUGAacgcgcCGACCACGUUcAACGaCACGa -3'
miRNA:   3'- cGCACU------GCUGGUGUAGcUUGCcGUGC- -5'
16991 5' -53.3 NC_004333.2 + 32274 0.66 0.828672
Target:  5'- cGUG-GGCGGUCGCAUCGucuacgauGGCGGuCACGg -3'
miRNA:   3'- -CGCaCUGCUGGUGUAGC--------UUGCC-GUGC- -5'
16991 5' -53.3 NC_004333.2 + 10147 0.66 0.828672
Target:  5'- uCGgGGCG-CCAggUAUCGAACGGguCGg -3'
miRNA:   3'- cGCaCUGCuGGU--GUAGCUUGCCguGC- -5'
16991 5' -53.3 NC_004333.2 + 9623 0.66 0.828672
Target:  5'- aGCuGUGucguugccgUGAgCGCGUCGGACGGCAaCGc -3'
miRNA:   3'- -CG-CACu--------GCUgGUGUAGCUUGCCGU-GC- -5'
16991 5' -53.3 NC_004333.2 + 32359 0.66 0.819457
Target:  5'- uGCG-GaACGugCGCAggCGu-CGGCGCGa -3'
miRNA:   3'- -CGCaC-UGCugGUGUa-GCuuGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 19222 0.66 0.810043
Target:  5'- cGCGUu-CGACCGCGU-GAAcaacgcgugccuCGGCGCGc -3'
miRNA:   3'- -CGCAcuGCUGGUGUAgCUU------------GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 44104 0.66 0.810043
Target:  5'- ---cGGCGACUucGCAUCGuuucgcGGCGGCugGu -3'
miRNA:   3'- cgcaCUGCUGG--UGUAGC------UUGCCGugC- -5'
16991 5' -53.3 NC_004333.2 + 29089 0.66 0.810043
Target:  5'- uCGUGACGGUCACA-CGGGCcGCGCc -3'
miRNA:   3'- cGCACUGCUGGUGUaGCUUGcCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.