miRNA display CGI


Results 21 - 40 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 38397 0.69 0.619165
Target:  5'- gGCGUGACGccgGCCACGgUCaaGACGGCGa- -3'
miRNA:   3'- -CGCACUGC---UGGUGU-AGc-UUGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 32076 0.7 0.58601
Target:  5'- aCGcGACGAUCGCAuagaUCGGcguCGGCGCGu -3'
miRNA:   3'- cGCaCUGCUGGUGU----AGCUu--GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 38464 0.72 0.48846
Target:  5'- gGCGcGACGcgaugauugcgcuGCCGCaAUgGGACGGCACGc -3'
miRNA:   3'- -CGCaCUGC-------------UGGUG-UAgCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 39234 0.75 0.33152
Target:  5'- uGCGUGcaaugcuCGACCGCAcccCGAGCGGC-CGg -3'
miRNA:   3'- -CGCACu------GCUGGUGUa--GCUUGCCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 11976 0.68 0.718122
Target:  5'- cGCGUcGACGAUCGCGgcCGuaucGCGGUGCa -3'
miRNA:   3'- -CGCA-CUGCUGGUGUa-GCu---UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 11904 0.69 0.652421
Target:  5'- uCGUcGCGGCCcgGCAUgCGcAGCGGCGCGc -3'
miRNA:   3'- cGCAcUGCUGG--UGUA-GC-UUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 27587 0.7 0.58601
Target:  5'- -gGUGAUGcCCgACGUCGAauagcGCGGCGCc -3'
miRNA:   3'- cgCACUGCuGG-UGUAGCU-----UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 24850 0.75 0.30783
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGCACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 16852 0.69 0.650206
Target:  5'- cGCGUcGCGGCCAaggcgAUCGAcgggcgacuguuCGGCACGg -3'
miRNA:   3'- -CGCAcUGCUGGUg----UAGCUu-----------GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 33296 0.78 0.214356
Target:  5'- cGCGUugcGuCGGCCGCAUCGAGCcaaccGGCGCGc -3'
miRNA:   3'- -CGCA---CuGCUGGUGUAGCUUG-----CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 47812 0.7 0.58601
Target:  5'- uCGUGcaGCGcGCCGCcugCGGACGGCGCu -3'
miRNA:   3'- cGCAC--UGC-UGGUGua-GCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 25378 0.69 0.619165
Target:  5'- gGUcUGAuuCGACCACAUCGAgccauccgGCGaGCGCGc -3'
miRNA:   3'- -CGcACU--GCUGGUGUAGCU--------UGC-CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 128 0.7 0.564087
Target:  5'- uCGUGACGACgAUgagauaGUCGugauuCGGCGCGa -3'
miRNA:   3'- cGCACUGCUGgUG------UAGCuu---GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 42017 0.72 0.489494
Target:  5'- cGCGUGaagcgcGCGGCCAa--CGAGCGGgGCGu -3'
miRNA:   3'- -CGCAC------UGCUGGUguaGCUUGCCgUGC- -5'
16991 5' -53.3 NC_004333.2 + 46815 0.74 0.373914
Target:  5'- cCGUGcgcaacacgaACGugCucgGCAUCGAACGGCACa -3'
miRNA:   3'- cGCAC----------UGCugG---UGUAGCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 37424 0.75 0.345528
Target:  5'- uGCGcGGCGugCACGUguacugcggcgugaCGAACGGCGCc -3'
miRNA:   3'- -CGCaCUGCugGUGUA--------------GCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 20699 0.67 0.739454
Target:  5'- gGCGUGuACgGAUCGCAgaCGAaugcggugaugACGGCGCGc -3'
miRNA:   3'- -CGCAC-UG-CUGGUGUa-GCU-----------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 44669 0.68 0.718122
Target:  5'- cGCGgcauCGGCacagACGUCGAAgCGGCACa -3'
miRNA:   3'- -CGCacu-GCUGg---UGUAGCUU-GCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 37701 0.68 0.685506
Target:  5'- cGCGUGGCGGCUcaauggccuGC-UCGAuguCGGCAa- -3'
miRNA:   3'- -CGCACUGCUGG---------UGuAGCUu--GCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 43072 0.69 0.660167
Target:  5'- aCGUGACGcCgCACAUCGAgacGCgaucaacgaguaucGGCGCGa -3'
miRNA:   3'- cGCACUGCuG-GUGUAGCU---UG--------------CCGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.