miRNA display CGI


Results 21 - 40 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 10004 0.68 0.718122
Target:  5'- ---cGGCGGCCAUugCGAGCGGCGu- -3'
miRNA:   3'- cgcaCUGCUGGUGuaGCUUGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 10147 0.66 0.828672
Target:  5'- uCGgGGCG-CCAggUAUCGAACGGguCGg -3'
miRNA:   3'- cGCaCUGCuGGU--GUAGCUUGCCguGC- -5'
16991 5' -53.3 NC_004333.2 + 10420 0.72 0.489494
Target:  5'- uGCGUGACGAaacgaCGCucGUCGAucucgcGCaGGCGCGg -3'
miRNA:   3'- -CGCACUGCUg----GUG--UAGCU------UG-CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 10511 0.66 0.800439
Target:  5'- ---cGACGAgCGgGUCGGGCGcGCGCu -3'
miRNA:   3'- cgcaCUGCUgGUgUAGCUUGC-CGUGc -5'
16991 5' -53.3 NC_004333.2 + 10806 0.68 0.707321
Target:  5'- ---gGACGGCCGCG-CGAcGCGGUGCa -3'
miRNA:   3'- cgcaCUGCUGGUGUaGCU-UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 10862 0.66 0.810043
Target:  5'- cGCGcuUGACG-CCGCG-CGGGaagaacgcCGGCGCGa -3'
miRNA:   3'- -CGC--ACUGCuGGUGUaGCUU--------GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 11097 0.66 0.790656
Target:  5'- --aUGAuCGugCGCGaCGAacaGCGGCACGa -3'
miRNA:   3'- cgcACU-GCugGUGUaGCU---UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 11870 0.79 0.177458
Target:  5'- cGCccGGCGACUAC-UCGGGCGGCGCGu -3'
miRNA:   3'- -CGcaCUGCUGGUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 11904 0.69 0.652421
Target:  5'- uCGUcGCGGCCcgGCAUgCGcAGCGGCGCGc -3'
miRNA:   3'- cGCAcUGCUGG--UGUA-GC-UUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 11976 0.68 0.718122
Target:  5'- cGCGUcGACGAUCGCGgcCGuaucGCGGUGCa -3'
miRNA:   3'- -CGCA-CUGCUGGUGUa-GCu---UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 12099 0.74 0.391871
Target:  5'- cGCGUGAaagaACC-CGUCGAacuuaccgaGCGGCACGa -3'
miRNA:   3'- -CGCACUgc--UGGuGUAGCU---------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 12283 0.68 0.707321
Target:  5'- gGCGUauaacGGCGugCGCGUCGcAACgGGC-CGg -3'
miRNA:   3'- -CGCA-----CUGCugGUGUAGC-UUG-CCGuGC- -5'
16991 5' -53.3 NC_004333.2 + 13093 0.66 0.828672
Target:  5'- gGCGUGuGCGcaGCCAguUGUCGAuguACGGCAUc -3'
miRNA:   3'- -CGCAC-UGC--UGGU--GUAGCU---UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 13281 0.69 0.640232
Target:  5'- aCGuUGACGGCCaacggcaACAUCGAaggcaACGGCGgGg -3'
miRNA:   3'- cGC-ACUGCUGG-------UGUAGCU-----UGCCGUgC- -5'
16991 5' -53.3 NC_004333.2 + 13436 0.67 0.780705
Target:  5'- cGCG-GGCGGCguCACGUCaacuaaGGGCGGCAUc -3'
miRNA:   3'- -CGCaCUGCUG--GUGUAG------CUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 13848 0.69 0.630252
Target:  5'- aCG-GGCG-CCGCGUCGAGCGcauugaGCGCGc -3'
miRNA:   3'- cGCaCUGCuGGUGUAGCUUGC------CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 14235 0.67 0.74996
Target:  5'- uGCGacGGCGugCGCGcgcgccucuuUCGAgccgagcgGCGGCACGc -3'
miRNA:   3'- -CGCa-CUGCugGUGU----------AGCU--------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 15127 0.69 0.641341
Target:  5'- uCGUGGcCGACCGCuacgcaCGuGCGGCGCu -3'
miRNA:   3'- cGCACU-GCUGGUGua----GCuUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 15480 0.67 0.780705
Target:  5'- gGCGUGcCGAgCGCAacagggcugcUCGcggcggucaccGGCGGCGCGu -3'
miRNA:   3'- -CGCACuGCUgGUGU----------AGC-----------UUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 16560 0.7 0.597034
Target:  5'- cGCGc-GCGGCCACAgcggcCGAgACGGCGCu -3'
miRNA:   3'- -CGCacUGCUGGUGUa----GCU-UGCCGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.