miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 8484 0.71 0.476257
Target:  5'- uCGCGACGGCGAgcCAGCCacaaCGuCCGCGu -3'
miRNA:   3'- -GCGUUGCCGUUa-GUUGGa---GC-GGUGCc -5'
16992 3' -53.6 NC_004333.2 + 8989 0.71 0.517063
Target:  5'- gCGCGGCGGCGAcCGACgcggcguucgcggCUUGCCagGCGGc -3'
miRNA:   3'- -GCGUUGCCGUUaGUUG-------------GAGCGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 9190 0.69 0.627837
Target:  5'- uCGCGACGGCAguGUCGAUCgcggUGCgCACc- -3'
miRNA:   3'- -GCGUUGCCGU--UAGUUGGa---GCG-GUGcc -5'
16992 3' -53.6 NC_004333.2 + 9237 0.67 0.705338
Target:  5'- gCGCcgAACGGgGGc--GCCUCGCCGCGu -3'
miRNA:   3'- -GCG--UUGCCgUUaguUGGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 9713 0.73 0.398032
Target:  5'- gGCAGC-GCAAUCAucGCgucgCGCCACGGa -3'
miRNA:   3'- gCGUUGcCGUUAGU--UGga--GCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 10515 0.67 0.748258
Target:  5'- aGCGGCGGUAAauggCGACCugcauaUCGUCGCa- -3'
miRNA:   3'- gCGUUGCCGUUa---GUUGG------AGCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 10997 0.68 0.683391
Target:  5'- gCGCGucgugaGCGGCGuGUC-GCCgCGCUGCGGg -3'
miRNA:   3'- -GCGU------UGCCGU-UAGuUGGaGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 11114 0.7 0.572365
Target:  5'- -aCAGCGGCAcgaaAUC-GCCUCGCCG-GGc -3'
miRNA:   3'- gcGUUGCCGU----UAGuUGGAGCGGUgCC- -5'
16992 3' -53.6 NC_004333.2 + 11335 0.7 0.528829
Target:  5'- gCGCGaugaagGCGGCGcgguucGUCGucACCUUGCCGCGc -3'
miRNA:   3'- -GCGU------UGCCGU------UAGU--UGGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 11614 0.69 0.638982
Target:  5'- aCGCGcCGGCcGUC-ACUUCGCgCGCGa -3'
miRNA:   3'- -GCGUuGCCGuUAGuUGGAGCG-GUGCc -5'
16992 3' -53.6 NC_004333.2 + 11827 0.66 0.789245
Target:  5'- gCGCGACGGCGcgcucCAGCUUgCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUua---GUUGGA-GCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 11947 0.67 0.705338
Target:  5'- gCGCuccaGGCGGUCGagcGCCUUGCaCGCGc -3'
miRNA:   3'- -GCGuug-CCGUUAGU---UGGAGCG-GUGCc -5'
16992 3' -53.6 NC_004333.2 + 12085 0.71 0.518129
Target:  5'- aCGUGGCuGGCGcgCAgcGCCgCGUCACGGg -3'
miRNA:   3'- -GCGUUG-CCGUuaGU--UGGaGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 12300 0.72 0.416818
Target:  5'- gCGCAuuGCGGCGuccugcgcgcCAGCCUCG-CGCGGg -3'
miRNA:   3'- -GCGU--UGCCGUua--------GUUGGAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 13308 0.66 0.762863
Target:  5'- gGCAACGGCGGggGACagggcaucuauaaCGCCACGu -3'
miRNA:   3'- gCGUUGCCGUUagUUGga-----------GCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 13827 0.73 0.370894
Target:  5'- aGCGACGGCGAcgguUCGACgacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGga----GCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 14235 0.66 0.789245
Target:  5'- uGCGACGGCGugcgCGcgcGCCUCuuucgaGCCgaGCGGc -3'
miRNA:   3'- gCGUUGCCGUua--GU---UGGAG------CGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 15285 0.67 0.712955
Target:  5'- uGCGGCGGCGcgGUCAGCaucagcaccgggcgCUUGCCGuCGa -3'
miRNA:   3'- gCGUUGCCGU--UAGUUG--------------GAGCGGU-GCc -5'
16992 3' -53.6 NC_004333.2 + 15618 0.66 0.770066
Target:  5'- gGUuuCGGCGAacgucgugccguuggCGACCUCGaUCACGGc -3'
miRNA:   3'- gCGuuGCCGUUa--------------GUUGGAGC-GGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 16652 0.67 0.726992
Target:  5'- uGCGACaGCAcuUCGACCU-GCC-CGGu -3'
miRNA:   3'- gCGUUGcCGUu-AGUUGGAgCGGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.