miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 416 0.66 0.804929
Target:  5'- gCGCGGCgaugugcuuGGCAcaGUCGGCCgggguguacgagGCCACGGc -3'
miRNA:   3'- -GCGUUG---------CCGU--UAGUUGGag----------CGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 977 0.66 0.808778
Target:  5'- cCGUcGCGGCGAcuUguGCCUCuGCUgcGCGGc -3'
miRNA:   3'- -GCGuUGCCGUU--AguUGGAG-CGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 1512 0.75 0.320517
Target:  5'- aGCGACGGCgAGUCGGCCugcagcgugaUCGUCAgCGGc -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
16992 3' -53.6 NC_004333.2 + 1832 0.66 0.789245
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
16992 3' -53.6 NC_004333.2 + 2194 0.66 0.808778
Target:  5'- gCGCcgagUGGCAGgccgggaCAccacGCCUCGCCGCGa -3'
miRNA:   3'- -GCGuu--GCCGUUa------GU----UGGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 2398 0.68 0.694395
Target:  5'- gGCGcCGGCGGUC-GCCuggUCGCCguacaGCGGc -3'
miRNA:   3'- gCGUuGCCGUUAGuUGG---AGCGG-----UGCC- -5'
16992 3' -53.6 NC_004333.2 + 2883 0.66 0.789245
Target:  5'- uCGCAGCGGCGaggcugauGUUGGCCgagacgUGCUGCGc -3'
miRNA:   3'- -GCGUUGCCGU--------UAGUUGGa-----GCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 3084 0.67 0.725918
Target:  5'- aGCGuCGGCGAUCuucGCCUCGUucgacagCGCGc -3'
miRNA:   3'- gCGUuGCCGUUAGu--UGGAGCG-------GUGCc -5'
16992 3' -53.6 NC_004333.2 + 3321 0.66 0.779221
Target:  5'- uCGCGcGCGGCGAUCuuCUUCaGCgucuCGCGGc -3'
miRNA:   3'- -GCGU-UGCCGUUAGuuGGAG-CG----GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 3587 0.67 0.725918
Target:  5'- uGCGccacaucGCGGCGAUCGuaUUCGCCcaguCGGg -3'
miRNA:   3'- gCGU-------UGCCGUUAGUugGAGCGGu---GCC- -5'
16992 3' -53.6 NC_004333.2 + 3735 0.66 0.808778
Target:  5'- uGCAcCGGCAGgccgagcGCCUCGCaCGCa- -3'
miRNA:   3'- gCGUuGCCGUUagu----UGGAGCG-GUGcc -5'
16992 3' -53.6 NC_004333.2 + 3927 0.66 0.799101
Target:  5'- aGCGGCGGCAGgcCGACCggcagguuggCGCCGu-- -3'
miRNA:   3'- gCGUUGCCGUUa-GUUGGa---------GCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 4187 0.66 0.769041
Target:  5'- uGCAGCGGC-GUguGCUucugCGCCugGa -3'
miRNA:   3'- gCGUUGCCGuUAguUGGa---GCGGugCc -5'
16992 3' -53.6 NC_004333.2 + 4966 0.66 0.789245
Target:  5'- gCGCAAUGGCcg--AGCCUUGCgGCaGGc -3'
miRNA:   3'- -GCGUUGCCGuuagUUGGAGCGgUG-CC- -5'
16992 3' -53.6 NC_004333.2 + 6059 0.67 0.705338
Target:  5'- uGCAcCGGCAAcuggcgcaccUCGcgacacGCCUCGUCGCGc -3'
miRNA:   3'- gCGUuGCCGUU----------AGU------UGGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 6597 0.69 0.627837
Target:  5'- cCGCcACGGCGcgCcGCCcagCGCCGCa- -3'
miRNA:   3'- -GCGuUGCCGUuaGuUGGa--GCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 6730 0.69 0.605569
Target:  5'- uGCAACGuGC--UCAAUUcgagCGCCACGGc -3'
miRNA:   3'- gCGUUGC-CGuuAGUUGGa---GCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 6950 0.77 0.231875
Target:  5'- aGCGACGGCGAcaCGACCggcgacagguagcccUCGCCACGa -3'
miRNA:   3'- gCGUUGCCGUUa-GUUGG---------------AGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 7495 0.68 0.672336
Target:  5'- aGCuuCGGgAAaauauccuUCAGCUUCGCgGCGGc -3'
miRNA:   3'- gCGuuGCCgUU--------AGUUGGAGCGgUGCC- -5'
16992 3' -53.6 NC_004333.2 + 7703 0.71 0.507515
Target:  5'- uCGUAGCGGUGAUCGGCgCggacaGCgACGGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUUG-Gag---CGgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.