miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 47795 0.69 0.602235
Target:  5'- aCGCGcuCGGCAacucuGUCGGCCUgcagcuguucaaagCGCCgACGGg -3'
miRNA:   3'- -GCGUu-GCCGU-----UAGUUGGA--------------GCGG-UGCC- -5'
16992 3' -53.6 NC_004333.2 + 47485 0.66 0.799101
Target:  5'- gGCGGCGGCA--CGAUCgCGCUcaccgagcACGGg -3'
miRNA:   3'- gCGUUGCCGUuaGUUGGaGCGG--------UGCC- -5'
16992 3' -53.6 NC_004333.2 + 47450 1.1 0.001185
Target:  5'- gCGCAACGGCAAUCAACCUCGCCACGGc -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGAGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 47054 0.71 0.486574
Target:  5'- gCGCAgcACGGCAc-CGACUUCGCgCGCGa -3'
miRNA:   3'- -GCGU--UGCCGUuaGUUGGAGCG-GUGCc -5'
16992 3' -53.6 NC_004333.2 + 46361 0.67 0.73128
Target:  5'- aGCGACGGCGGUUcuauacaaAGCCUgacuaucggcucgaaCGCCgugaucuaaGCGGg -3'
miRNA:   3'- gCGUUGCCGUUAG--------UUGGA---------------GCGG---------UGCC- -5'
16992 3' -53.6 NC_004333.2 + 45839 0.66 0.802994
Target:  5'- gCGCAACGGCcgcacgGugCUCGCauuccgccaguucaaCGCGGg -3'
miRNA:   3'- -GCGUUGCCGuuag--UugGAGCG---------------GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 45771 0.67 0.705338
Target:  5'- cCGCuguACGGCGAccaggCGACCgccggcgcCGUCAUGGg -3'
miRNA:   3'- -GCGu--UGCCGUUa----GUUGGa-------GCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 45319 0.7 0.572365
Target:  5'- gGCAucgACGGUua-CAAgCUCGCCGCGa -3'
miRNA:   3'- gCGU---UGCCGuuaGUUgGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 45286 0.76 0.248304
Target:  5'- aCGUcuCGGCcaacAUCAGCCUCGCCGCu- -3'
miRNA:   3'- -GCGuuGCCGu---UAGUUGGAGCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 45190 0.75 0.28988
Target:  5'- gCGCAGCGGCAG-CuguuCCgCGCCACGa -3'
miRNA:   3'- -GCGUUGCCGUUaGuu--GGaGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 44600 0.66 0.808778
Target:  5'- cCGCGAugUGGCGcacuaugugGUCGGCCgacgCGCUgcGCGGc -3'
miRNA:   3'- -GCGUU--GCCGU---------UAGUUGGa---GCGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 44501 0.68 0.683391
Target:  5'- aCGCGACGGCuca-GACCgUCGCgaACGa -3'
miRNA:   3'- -GCGUUGCCGuuagUUGG-AGCGg-UGCc -5'
16992 3' -53.6 NC_004333.2 + 44235 0.69 0.594466
Target:  5'- uGCAgaACGGCGccaaccugccgGUCGGCCUgcCGCCGCu- -3'
miRNA:   3'- gCGU--UGCCGU-----------UAGUUGGA--GCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 44096 0.66 0.78825
Target:  5'- gGUAAgGGCGG-CGACUUCGCaucguuuCGCGGc -3'
miRNA:   3'- gCGUUgCCGUUaGUUGGAGCG-------GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 43550 0.66 0.769041
Target:  5'- uCGCGAUGGCGcUCAauuacgguACCUCGaaacugccggCGCGGc -3'
miRNA:   3'- -GCGUUGCCGUuAGU--------UGGAGCg---------GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 43313 0.75 0.304903
Target:  5'- aGCGGCGGCAG-CGGCaUCGgCACGGc -3'
miRNA:   3'- gCGUUGCCGUUaGUUGgAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 42303 0.67 0.726992
Target:  5'- uGCAugGGCAG-CGGCa---CCACGGg -3'
miRNA:   3'- gCGUugCCGUUaGUUGgagcGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 42211 0.66 0.769041
Target:  5'- uCGCcuGCGGC--UCGACUUCGaCCGCa- -3'
miRNA:   3'- -GCGu-UGCCGuuAGUUGGAGC-GGUGcc -5'
16992 3' -53.6 NC_004333.2 + 41933 0.66 0.799101
Target:  5'- gGUAugGGCGAagaaUCGACCcacuaauuUCGCgCACGc -3'
miRNA:   3'- gCGUugCCGUU----AGUUGG--------AGCG-GUGCc -5'
16992 3' -53.6 NC_004333.2 + 41716 0.67 0.748258
Target:  5'- gGCGgcACGGCGcgAUCAACgaggagaUCGgCGCGGg -3'
miRNA:   3'- gCGU--UGCCGU--UAGUUGg------AGCgGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.