miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 27431 0.82 0.10865
Target:  5'- gGCGACGGCuGUCGACCaggCGCCAuuCGGg -3'
miRNA:   3'- gCGUUGCCGuUAGUUGGa--GCGGU--GCC- -5'
16992 3' -53.6 NC_004333.2 + 8989 0.71 0.517063
Target:  5'- gCGCGGCGGCGAcCGACgcggcguucgcggCUUGCCagGCGGc -3'
miRNA:   3'- -GCGUUGCCGUUaGUUG-------------GAGCGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 35829 0.71 0.518129
Target:  5'- gGCuGCGGCAAcccCAgauACUUCGCCGCGu -3'
miRNA:   3'- gCGuUGCCGUUa--GU---UGGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 41668 0.66 0.808778
Target:  5'- aCGC--CGGCAAggagaauauccUCGugCUCGaCGCGGg -3'
miRNA:   3'- -GCGuuGCCGUU-----------AGUugGAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 1512 0.75 0.320517
Target:  5'- aGCGACGGCgAGUCGGCCugcagcgugaUCGUCAgCGGc -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
16992 3' -53.6 NC_004333.2 + 29909 0.74 0.353516
Target:  5'- cCGCGcGCGGCAuccUCGGCCgcuUUGCCAUGGc -3'
miRNA:   3'- -GCGU-UGCCGUu--AGUUGG---AGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 20225 0.73 0.388845
Target:  5'- uCGUGGCGGCGAUCGACCgcgacugGCCuACGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGag-----CGG-UGCc -5'
16992 3' -53.6 NC_004333.2 + 12300 0.72 0.416818
Target:  5'- gCGCAuuGCGGCGuccugcgcgcCAGCCUCG-CGCGGg -3'
miRNA:   3'- -GCGU--UGCCGUua--------GUUGGAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 35542 0.72 0.455958
Target:  5'- aGCuguGCGGCGGUCAgaACUUgGCC-CGGu -3'
miRNA:   3'- gCGu--UGCCGUUAGU--UGGAgCGGuGCC- -5'
16992 3' -53.6 NC_004333.2 + 38487 0.71 0.507515
Target:  5'- cCGCAaugggACGGCAcgCAgcGCCUCGaCACGu -3'
miRNA:   3'- -GCGU-----UGCCGUuaGU--UGGAGCgGUGCc -5'
16992 3' -53.6 NC_004333.2 + 40181 0.71 0.486574
Target:  5'- aGCAugGGCGAUCAuccGCCgauuccCGCUugGc -3'
miRNA:   3'- gCGUugCCGUUAGU---UGGa-----GCGGugCc -5'
16992 3' -53.6 NC_004333.2 + 38403 0.72 0.435157
Target:  5'- aCGCcggccacggucaaGACGGCGAUCGagACgCUUGCCGCGu -3'
miRNA:   3'- -GCG-------------UUGCCGUUAGU--UG-GAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 19627 0.79 0.167562
Target:  5'- gCGCGGCGaGCGcggccgacgcuggccGUCAACagCUCGCCACGGa -3'
miRNA:   3'- -GCGUUGC-CGU---------------UAGUUG--GAGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 33752 0.71 0.486574
Target:  5'- gGUuACGGCAGUCGugCcCGUCACGu -3'
miRNA:   3'- gCGuUGCCGUUAGUugGaGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 18362 0.75 0.282588
Target:  5'- gCGUAACGGCGugucguUUAACCUCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUu-----AGUUGGAGCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 20601 0.72 0.426412
Target:  5'- uGCAggcGCGGC--UCGGCCUCGCgCAguCGGg -3'
miRNA:   3'- gCGU---UGCCGuuAGUUGGAGCG-GU--GCC- -5'
16992 3' -53.6 NC_004333.2 + 7703 0.71 0.507515
Target:  5'- uCGUAGCGGUGAUCGGCgCggacaGCgACGGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUUG-Gag---CGgUGCC- -5'
16992 3' -53.6 NC_004333.2 + 25596 0.71 0.518129
Target:  5'- aCGCAGCGaCGAUaaauGCCUCGCUACu- -3'
miRNA:   3'- -GCGUUGCcGUUAgu--UGGAGCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 45190 0.75 0.28988
Target:  5'- gCGCAGCGGCAG-CuguuCCgCGCCACGa -3'
miRNA:   3'- -GCGUUGCCGUUaGuu--GGaGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 13827 0.73 0.370894
Target:  5'- aGCGACGGCGAcgguUCGACgacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGga----GCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.