miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 47450 1.1 0.001185
Target:  5'- gCGCAACGGCAAUCAACCUCGCCACGGc -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGAGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 27431 0.82 0.10865
Target:  5'- gGCGACGGCuGUCGACCaggCGCCAuuCGGg -3'
miRNA:   3'- gCGUUGCCGuUAGUUGGa--GCGGU--GCC- -5'
16992 3' -53.6 NC_004333.2 + 34250 0.8 0.136329
Target:  5'- aCGCuGGCGGCAG-CGGCCacgaUCGCCACGGc -3'
miRNA:   3'- -GCG-UUGCCGUUaGUUGG----AGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 19627 0.79 0.167562
Target:  5'- gCGCGGCGaGCGcggccgacgcuggccGUCAACagCUCGCCACGGa -3'
miRNA:   3'- -GCGUUGC-CGU---------------UAGUUG--GAGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 6950 0.77 0.231875
Target:  5'- aGCGACGGCGAcaCGACCggcgacagguagcccUCGCCACGa -3'
miRNA:   3'- gCGUUGCCGUUa-GUUGG---------------AGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 45286 0.76 0.248304
Target:  5'- aCGUcuCGGCcaacAUCAGCCUCGCCGCu- -3'
miRNA:   3'- -GCGuuGCCGu---UAGUUGGAGCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 38609 0.75 0.282588
Target:  5'- gGUGGCGGCAA-CGAaCUCGCCACGa -3'
miRNA:   3'- gCGUUGCCGUUaGUUgGAGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 18362 0.75 0.282588
Target:  5'- gCGUAACGGCGugucguUUAACCUCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUu-----AGUUGGAGCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 45190 0.75 0.28988
Target:  5'- gCGCAGCGGCAG-CuguuCCgCGCCACGa -3'
miRNA:   3'- -GCGUUGCCGUUaGuu--GGaGCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 43313 0.75 0.304903
Target:  5'- aGCGGCGGCAG-CGGCaUCGgCACGGc -3'
miRNA:   3'- gCGUUGCCGUUaGUUGgAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 1512 0.75 0.320517
Target:  5'- aGCGACGGCgAGUCGGCCugcagcgugaUCGUCAgCGGc -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
16992 3' -53.6 NC_004333.2 + 29909 0.74 0.353516
Target:  5'- cCGCGcGCGGCAuccUCGGCCgcuUUGCCAUGGc -3'
miRNA:   3'- -GCGU-UGCCGUu--AGUUGG---AGCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 17885 0.74 0.362133
Target:  5'- gCGCGACGGCGGcCAG-CUCGCCGuCGa -3'
miRNA:   3'- -GCGUUGCCGUUaGUUgGAGCGGU-GCc -5'
16992 3' -53.6 NC_004333.2 + 13827 0.73 0.370894
Target:  5'- aGCGACGGCGAcgguUCGACgacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGga----GCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 20225 0.73 0.388845
Target:  5'- uCGUGGCGGCGAUCGACCgcgacugGCCuACGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGag-----CGG-UGCc -5'
16992 3' -53.6 NC_004333.2 + 9713 0.73 0.398032
Target:  5'- gGCAGC-GCAAUCAucGCgucgCGCCACGGa -3'
miRNA:   3'- gCGUUGcCGUUAGU--UGga--GCGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 17955 0.72 0.416818
Target:  5'- gCGCGGCGcGCGAUCGAUCagGCaGCGGc -3'
miRNA:   3'- -GCGUUGC-CGUUAGUUGGagCGgUGCC- -5'
16992 3' -53.6 NC_004333.2 + 12300 0.72 0.416818
Target:  5'- gCGCAuuGCGGCGuccugcgcgcCAGCCUCG-CGCGGg -3'
miRNA:   3'- -GCGU--UGCCGUua--------GUUGGAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 32294 0.72 0.426412
Target:  5'- -aCGAUGGCGGUCAcggcGgCUCGCuCGCGGg -3'
miRNA:   3'- gcGUUGCCGUUAGU----UgGAGCG-GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 20601 0.72 0.426412
Target:  5'- uGCAggcGCGGC--UCGGCCUCGCgCAguCGGg -3'
miRNA:   3'- gCGU---UGCCGuuAGUUGGAGCG-GU--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.