miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 43550 0.66 0.769041
Target:  5'- uCGCGAUGGCGcUCAauuacgguACCUCGaaacugccggCGCGGc -3'
miRNA:   3'- -GCGUUGCCGUuAGU--------UGGAGCg---------GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 13308 0.66 0.762863
Target:  5'- gGCAACGGCGGggGACagggcaucuauaaCGCCACGu -3'
miRNA:   3'- gCGUUGCCGUUagUUGga-----------GCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 38946 0.66 0.758716
Target:  5'- aCGCGAcCGGCAAUCGccGCUUCauGCC-CGu -3'
miRNA:   3'- -GCGUU-GCCGUUAGU--UGGAG--CGGuGCc -5'
16992 3' -53.6 NC_004333.2 + 39670 0.66 0.758716
Target:  5'- uCGCcgaGGCGGCGcgcuuccugGUCGGCCUgccugCGCCACu- -3'
miRNA:   3'- -GCG---UUGCCGU---------UAGUUGGA-----GCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 23009 0.66 0.755592
Target:  5'- aCGCGGCGGCAggcgagcguGUCGAUCggaggcaucgggcagGCCGCGa -3'
miRNA:   3'- -GCGUUGCCGU---------UAGUUGGag-------------CGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 10515 0.67 0.748258
Target:  5'- aGCGGCGGUAAauggCGACCugcauaUCGUCGCa- -3'
miRNA:   3'- gCGUUGCCGUUa---GUUGG------AGCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 41716 0.67 0.748258
Target:  5'- gGCGgcACGGCGcgAUCAACgaggagaUCGgCGCGGg -3'
miRNA:   3'- gCGU--UGCCGU--UAGUUGg------AGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 40013 0.67 0.748258
Target:  5'- aCGCGAUGgacGCGGcCGACCugUCGCCACa- -3'
miRNA:   3'- -GCGUUGC---CGUUaGUUGG--AGCGGUGcc -5'
16992 3' -53.6 NC_004333.2 + 17409 0.67 0.745097
Target:  5'- gCGCAgcGCGGUcacgacgcgcugacGAUCAaaACgUCGCC-CGGg -3'
miRNA:   3'- -GCGU--UGCCG--------------UUAGU--UGgAGCGGuGCC- -5'
16992 3' -53.6 NC_004333.2 + 39758 0.67 0.736616
Target:  5'- aCGuCGGCGGCAccguAUCGGCgacguugCUCGaCACGGg -3'
miRNA:   3'- -GC-GUUGCCGU----UAGUUG-------GAGCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 46361 0.67 0.73128
Target:  5'- aGCGACGGCGGUUcuauacaaAGCCUgacuaucggcucgaaCGCCgugaucuaaGCGGg -3'
miRNA:   3'- gCGUUGCCGUUAG--------UUGGA---------------GCGG---------UGCC- -5'
16992 3' -53.6 NC_004333.2 + 28964 0.67 0.730209
Target:  5'- aCGCGgucgaacGCGGCGAUCAguugcgcggccGCCgggucggcgugcgcaUCGCgCGCGGc -3'
miRNA:   3'- -GCGU-------UGCCGUUAGU-----------UGG---------------AGCG-GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 27391 0.67 0.726992
Target:  5'- gCGCGACGGCcgugccGUCAugUUUGCCGu-- -3'
miRNA:   3'- -GCGUUGCCGu-----UAGUugGAGCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 16652 0.67 0.726992
Target:  5'- uGCGACaGCAcuUCGACCU-GCC-CGGu -3'
miRNA:   3'- gCGUUGcCGUu-AGUUGGAgCGGuGCC- -5'
16992 3' -53.6 NC_004333.2 + 42303 0.67 0.726992
Target:  5'- uGCAugGGCAG-CGGCa---CCACGGg -3'
miRNA:   3'- gCGUugCCGUUaGUUGgagcGGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 3084 0.67 0.725918
Target:  5'- aGCGuCGGCGAUCuucGCCUCGUucgacagCGCGc -3'
miRNA:   3'- gCGUuGCCGUUAGu--UGGAGCG-------GUGCc -5'
16992 3' -53.6 NC_004333.2 + 3587 0.67 0.725918
Target:  5'- uGCGccacaucGCGGCGAUCGuaUUCGCCcaguCGGg -3'
miRNA:   3'- gCGU-------UGCCGUUAGUugGAGCGGu---GCC- -5'
16992 3' -53.6 NC_004333.2 + 36952 0.67 0.723767
Target:  5'- aGCGcCGGCAAggAGCCgCGCCcgaaucacgugcgcGCGGg -3'
miRNA:   3'- gCGUuGCCGUUagUUGGaGCGG--------------UGCC- -5'
16992 3' -53.6 NC_004333.2 + 39130 0.67 0.716208
Target:  5'- gCGCGACGGC-AUCGGC-UUGCCGa-- -3'
miRNA:   3'- -GCGUUGCCGuUAGUUGgAGCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 29881 0.67 0.716208
Target:  5'- gCGCGugcCGGCGAagAACUUCGCCuuGa -3'
miRNA:   3'- -GCGUu--GCCGUUagUUGGAGCGGugCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.