miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 3' -53.6 NC_004333.2 + 37322 0.66 0.796163
Target:  5'- uCGCGGCGGUgcucgacgcgcucgAAUCuGCgUCGCCcUGGc -3'
miRNA:   3'- -GCGUUGCCG--------------UUAGuUGgAGCGGuGCC- -5'
16992 3' -53.6 NC_004333.2 + 25429 0.66 0.796163
Target:  5'- gGCGGCGGCcGUCAcGCCgggcgUGCCGguuacgacgacaccCGGg -3'
miRNA:   3'- gCGUUGCCGuUAGU-UGGa----GCGGU--------------GCC- -5'
16992 3' -53.6 NC_004333.2 + 11827 0.66 0.789245
Target:  5'- gCGCGACGGCGcgcucCAGCUUgCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUua---GUUGGA-GCGGUgcc -5'
16992 3' -53.6 NC_004333.2 + 4966 0.66 0.789245
Target:  5'- gCGCAAUGGCcg--AGCCUUGCgGCaGGc -3'
miRNA:   3'- -GCGUUGCCGuuagUUGGAGCGgUG-CC- -5'
16992 3' -53.6 NC_004333.2 + 14235 0.66 0.789245
Target:  5'- uGCGACGGCGugcgCGcgcGCCUCuuucgaGCCgaGCGGc -3'
miRNA:   3'- gCGUUGCCGUua--GU---UGGAG------CGG--UGCC- -5'
16992 3' -53.6 NC_004333.2 + 1832 0.66 0.789245
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
16992 3' -53.6 NC_004333.2 + 38563 0.66 0.789245
Target:  5'- gGCAGcCGGUGcgCAACCggccgaUGCCGCGc -3'
miRNA:   3'- gCGUU-GCCGUuaGUUGGa-----GCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 2883 0.66 0.789245
Target:  5'- uCGCAGCGGCGaggcugauGUUGGCCgagacgUGCUGCGc -3'
miRNA:   3'- -GCGUUGCCGU--------UAGUUGGa-----GCGGUGCc -5'
16992 3' -53.6 NC_004333.2 + 28749 0.66 0.78825
Target:  5'- aGCAACuGCGcgagcgccgcGUCGACCgcgcgggUCGCgGCGGc -3'
miRNA:   3'- gCGUUGcCGU----------UAGUUGG-------AGCGgUGCC- -5'
16992 3' -53.6 NC_004333.2 + 44096 0.66 0.78825
Target:  5'- gGUAAgGGCGG-CGACUUCGCaucguuuCGCGGc -3'
miRNA:   3'- gCGUUgCCGUUaGUUGGAGCG-------GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 29312 0.66 0.779221
Target:  5'- gCGCcccGGCGGCAAU--GCgUUGCgCACGGc -3'
miRNA:   3'- -GCG---UUGCCGUUAguUGgAGCG-GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 3321 0.66 0.779221
Target:  5'- uCGCGcGCGGCGAUCuuCUUCaGCgucuCGCGGc -3'
miRNA:   3'- -GCGU-UGCCGUUAGuuGGAG-CG----GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 18968 0.66 0.779221
Target:  5'- gGCAACGGCugg-AACgaCGCCaugcGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGgaGCGG----UGCC- -5'
16992 3' -53.6 NC_004333.2 + 15618 0.66 0.770066
Target:  5'- gGUuuCGGCGAacgucgugccguuggCGACCUCGaUCACGGc -3'
miRNA:   3'- gCGuuGCCGUUa--------------GUUGGAGC-GGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 32259 0.66 0.769041
Target:  5'- aGCAGCGGCcgaaAGCCUuccggaUGgCGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGGA------GCgGUGCC- -5'
16992 3' -53.6 NC_004333.2 + 18283 0.66 0.769041
Target:  5'- cCGCGcGCGGCccGAUCGcgcagcGCUUCGCCgACGa -3'
miRNA:   3'- -GCGU-UGCCG--UUAGU------UGGAGCGG-UGCc -5'
16992 3' -53.6 NC_004333.2 + 42211 0.66 0.769041
Target:  5'- uCGCcuGCGGC--UCGACUUCGaCCGCa- -3'
miRNA:   3'- -GCGu-UGCCGuuAGUUGGAGC-GGUGcc -5'
16992 3' -53.6 NC_004333.2 + 43550 0.66 0.769041
Target:  5'- uCGCGAUGGCGcUCAauuacgguACCUCGaaacugccggCGCGGc -3'
miRNA:   3'- -GCGUUGCCGUuAGU--------UGGAGCg---------GUGCC- -5'
16992 3' -53.6 NC_004333.2 + 4187 0.66 0.769041
Target:  5'- uGCAGCGGC-GUguGCUucugCGCCugGa -3'
miRNA:   3'- gCGUUGCCGuUAguUGGa---GCGGugCc -5'
16992 3' -53.6 NC_004333.2 + 28447 0.66 0.769041
Target:  5'- gGCAGCGGCGccGUCuuGCa-CGCCACc- -3'
miRNA:   3'- gCGUUGCCGU--UAGu-UGgaGCGGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.