miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 7847 0.67 0.368028
Target:  5'- cGCGGCcuGCGcCGGccauuuccagcUCGCGCUCGCCc- -3'
miRNA:   3'- cCGCCGc-CGU-GCU-----------AGCGCGAGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 30639 0.67 0.359703
Target:  5'- cGCGGCaaGGCGCGGcgUGCGCUgcUCGAg -3'
miRNA:   3'- cCGCCG--CCGUGCUa-GCGCGAguGGCU- -5'
16992 5' -60.4 NC_004333.2 + 40031 0.67 0.359703
Target:  5'- cGCGGCGcCACGG-CGCGgaCGCCu- -3'
miRNA:   3'- cCGCCGCcGUGCUaGCGCgaGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 23120 0.67 0.359703
Target:  5'- -aCGGCGGCACuGAUguugCGCGCggACUGGa -3'
miRNA:   3'- ccGCCGCCGUG-CUA----GCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 25428 0.68 0.35151
Target:  5'- cGGCGGCGGC-CGucacgcCGgGCgUGCCGGu -3'
miRNA:   3'- -CCGCCGCCGuGCua----GCgCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 14269 0.68 0.35151
Target:  5'- aGCGGCGGCACGccuUCGag--CAUCGGg -3'
miRNA:   3'- cCGCCGCCGUGCu--AGCgcgaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 22656 0.68 0.35151
Target:  5'- aGCGGCGcGUACcaaGA-CGCGCUCgGCCGc -3'
miRNA:   3'- cCGCCGC-CGUG---CUaGCGCGAG-UGGCu -5'
16992 5' -60.4 NC_004333.2 + 30294 0.68 0.35151
Target:  5'- cGGCGaGCuGGC-CGccGUCGCGC-CugCGAc -3'
miRNA:   3'- -CCGC-CG-CCGuGC--UAGCGCGaGugGCU- -5'
16992 5' -60.4 NC_004333.2 + 17871 0.68 0.35151
Target:  5'- gGGUGGUgucgcaGGCGCGAcggCGgccaGCUCGCCGu -3'
miRNA:   3'- -CCGCCG------CCGUGCUa--GCg---CGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 37323 0.68 0.343451
Target:  5'- cGCGGCGGUgcuCGA-CGCGCUCGa--- -3'
miRNA:   3'- cCGCCGCCGu--GCUaGCGCGAGUggcu -5'
16992 5' -60.4 NC_004333.2 + 29384 0.68 0.343451
Target:  5'- uGCGGCcGCGCGAUaagCGCGgUUCAgCGAu -3'
miRNA:   3'- cCGCCGcCGUGCUA---GCGC-GAGUgGCU- -5'
16992 5' -60.4 NC_004333.2 + 7482 0.68 0.343451
Target:  5'- cGCGGCgaucgGGUugguguucuuuGCGGUCGCGagugCGCCGAa -3'
miRNA:   3'- cCGCCG-----CCG-----------UGCUAGCGCga--GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 19292 0.68 0.343451
Target:  5'- uGCGcCGaGCGCGAUCGCGCg-GCaCGAg -3'
miRNA:   3'- cCGCcGC-CGUGCUAGCGCGagUG-GCU- -5'
16992 5' -60.4 NC_004333.2 + 22407 0.68 0.343451
Target:  5'- aGGCuucGCGGCGCa--UGCGCgCACCGAu -3'
miRNA:   3'- -CCGc--CGCCGUGcuaGCGCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 24923 0.68 0.341855
Target:  5'- aGGCuGGaCGGuCACGAacaacacgaccgCGCGUUCGCCGc -3'
miRNA:   3'- -CCG-CC-GCC-GUGCUa-----------GCGCGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 28531 0.68 0.338679
Target:  5'- cGUGGCGagcuguugacggccaGCGuCGGcCGCGCUCGCCGc -3'
miRNA:   3'- cCGCCGC---------------CGU-GCUaGCGCGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 8550 0.68 0.335525
Target:  5'- cGGCaugccCGGCugGAUCGUGUU-GCCGAa -3'
miRNA:   3'- -CCGcc---GCCGugCUAGCGCGAgUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 38648 0.68 0.330834
Target:  5'- cGGCccgGGCGGCACGGgcaagucguacuucgUCGagcaGCUgGCCGc -3'
miRNA:   3'- -CCG---CCGCCGUGCU---------------AGCg---CGAgUGGCu -5'
16992 5' -60.4 NC_004333.2 + 24818 0.68 0.327734
Target:  5'- --gGGCGGCACGGUgaCGCUCACa-- -3'
miRNA:   3'- ccgCCGCCGUGCUAgcGCGAGUGgcu -5'
16992 5' -60.4 NC_004333.2 + 3573 0.68 0.327734
Target:  5'- cGCGGCGGCAgCGGUacgGUGUUuucccacaCGCCGAc -3'
miRNA:   3'- cCGCCGCCGU-GCUAg--CGCGA--------GUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.