miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 41833 0.66 0.408893
Target:  5'- cGGCGcaucguaaaaucgcGCGGUGCGGUCGUcCUCACgGc -3'
miRNA:   3'- -CCGC--------------CGCCGUGCUAGCGcGAGUGgCu -5'
16992 5' -60.4 NC_004333.2 + 23010 0.67 0.402629
Target:  5'- cGCGGCGGCagGCGAgCGUGUcgAUCGGa -3'
miRNA:   3'- cCGCCGCCG--UGCUaGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 27731 0.67 0.402629
Target:  5'- cGCGaucGCGGCGCGAaucuggUCG-GC-CGCCGAg -3'
miRNA:   3'- cCGC---CGCCGUGCU------AGCgCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11714 0.67 0.40085
Target:  5'- gGGCGGCGuGCugGcGUCcuGCGCgauguccggcaGCCGAc -3'
miRNA:   3'- -CCGCCGC-CGugC-UAG--CGCGag---------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 33183 0.67 0.393787
Target:  5'- cGGCGGCccgcuaaccGGCuucuCGAUCGaCGUcgguaUCAUCGAc -3'
miRNA:   3'- -CCGCCG---------CCGu---GCUAGC-GCG-----AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 12287 0.67 0.393787
Target:  5'- cGGCaccGGCGGCGCGcAUUGCgGCguccugcgCGCCa- -3'
miRNA:   3'- -CCG---CCGCCGUGC-UAGCG-CGa-------GUGGcu -5'
16992 5' -60.4 NC_004333.2 + 20445 0.67 0.393787
Target:  5'- cGGCGGCGcgaagccuGCGcCGGUCGUGaCgcaGCCGGu -3'
miRNA:   3'- -CCGCCGC--------CGU-GCUAGCGC-Gag-UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 14362 0.67 0.385071
Target:  5'- -aCGGCGGCAUGuUUGCGCUuCAggUCGGc -3'
miRNA:   3'- ccGCCGCCGUGCuAGCGCGA-GU--GGCU- -5'
16992 5' -60.4 NC_004333.2 + 11925 0.67 0.385071
Target:  5'- aGCGGCGcGCGCGccauuacgCGCGCUCcaGgCGGu -3'
miRNA:   3'- cCGCCGC-CGUGCua------GCGCGAG--UgGCU- -5'
16992 5' -60.4 NC_004333.2 + 42978 0.67 0.376485
Target:  5'- cGcCGGCGGacgaGCGggCgGCGCUCucgACCGAu -3'
miRNA:   3'- cC-GCCGCCg---UGCuaG-CGCGAG---UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 35802 0.67 0.376485
Target:  5'- gGGCGG-GGCGCGggCGgGCgcuacggCGCCc- -3'
miRNA:   3'- -CCGCCgCCGUGCuaGCgCGa------GUGGcu -5'
16992 5' -60.4 NC_004333.2 + 6858 0.67 0.376485
Target:  5'- cGGCGGCuGCGCacugcAUUGCGCagcCAUCGAg -3'
miRNA:   3'- -CCGCCGcCGUGc----UAGCGCGa--GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 23235 0.67 0.376485
Target:  5'- cGGCGGCGaacGCGcCGGUCGUGUUguUCGu -3'
miRNA:   3'- -CCGCCGC---CGU-GCUAGCGCGAguGGCu -5'
16992 5' -60.4 NC_004333.2 + 4724 0.67 0.375633
Target:  5'- uGCGGCGcgcaagcGCGCGAUgCGCGCguccgUCAgcCCGAc -3'
miRNA:   3'- cCGCCGC-------CGUGCUA-GCGCG-----AGU--GGCU- -5'
16992 5' -60.4 NC_004333.2 + 9608 0.67 0.368028
Target:  5'- cGCGGCaucGGC-CGGUUGCGC--ACCGGc -3'
miRNA:   3'- cCGCCG---CCGuGCUAGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 20722 0.67 0.368028
Target:  5'- uGCGGUgaugacGGCGCGcgCGCuGCcggacaUCGCCGAc -3'
miRNA:   3'- cCGCCG------CCGUGCuaGCG-CG------AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 3123 0.67 0.368028
Target:  5'- cGCGGCcGCGCGGUguucagcguuugCGCGC-CGCCa- -3'
miRNA:   3'- cCGCCGcCGUGCUA------------GCGCGaGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 29962 0.67 0.368028
Target:  5'- cGCGuGcCGaGCGCGGcCGCGCUgcCACCGGc -3'
miRNA:   3'- cCGC-C-GC-CGUGCUaGCGCGA--GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 43372 0.67 0.368028
Target:  5'- gGGCGGCGuaugagcgucaCGCGAcgCGgGCUCACCc- -3'
miRNA:   3'- -CCGCCGCc----------GUGCUa-GCgCGAGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 35873 0.67 0.368028
Target:  5'- aGGCuGGCGcGCAgGAcgccgcaaugCGCGC-CGCCGGu -3'
miRNA:   3'- -CCG-CCGC-CGUgCUa---------GCGCGaGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.