miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 48094 0.73 0.149513
Target:  5'- aGGCgcaGGCGGCAacCGggCGCGCgcaccgCGCCGGc -3'
miRNA:   3'- -CCG---CCGCCGU--GCuaGCGCGa-----GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 15427 0.73 0.149513
Target:  5'- uGGcCGGCGGCAgCGAccugCGCgugacguucuGCUCGCCGGc -3'
miRNA:   3'- -CC-GCCGCCGU-GCUa---GCG----------CGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 38608 0.73 0.153547
Target:  5'- aGGUGGCGGCaacgaacucgccACGAUCGgCGCcgCAUUGAa -3'
miRNA:   3'- -CCGCCGCCG------------UGCUAGC-GCGa-GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 43315 0.73 0.157679
Target:  5'- cGGCGGCagcggcaucGGCACGGcgCGCGCguacggucaGCCGAc -3'
miRNA:   3'- -CCGCCG---------CCGUGCUa-GCGCGag-------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 17502 0.73 0.157679
Target:  5'- cGGCGGCGGCGCGAaCG-GCUUcaugaagguGCuCGAg -3'
miRNA:   3'- -CCGCCGCCGUGCUaGCgCGAG---------UG-GCU- -5'
16992 5' -60.4 NC_004333.2 + 21521 0.73 0.157679
Target:  5'- cGGCaGcCGGCGCGAUCaCGCUCA-CGAg -3'
miRNA:   3'- -CCGcC-GCCGUGCUAGcGCGAGUgGCU- -5'
16992 5' -60.4 NC_004333.2 + 28867 0.73 0.158938
Target:  5'- cGGCGcgcucaagcgcucguGCcGCGCGAUCGCGCUCggcgcagGCCGGc -3'
miRNA:   3'- -CCGC---------------CGcCGUGCUAGCGCGAG-------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 41715 0.73 0.160631
Target:  5'- gGGCGGCacGGCGCGAUCaacgaggagaucgGCGCgggcgacucgcgCGCCGGg -3'
miRNA:   3'- -CCGCCG--CCGUGCUAG-------------CGCGa-----------GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 25128 0.73 0.161911
Target:  5'- cGGCGGCGcGCACGuUCGCgGCcugC-CCGAu -3'
miRNA:   3'- -CCGCCGC-CGUGCuAGCG-CGa--GuGGCU- -5'
16992 5' -60.4 NC_004333.2 + 20228 0.73 0.16234
Target:  5'- uGGCGGCgaucgaccgcgacuGGCcuACGAUCGCGCcgcacaucgacuccuUCAUCGAa -3'
miRNA:   3'- -CCGCCG--------------CCG--UGCUAGCGCG---------------AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 40728 0.72 0.170235
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 23874 0.72 0.179879
Target:  5'- cGGUcGCGGCuguuccaGGUCGCGCagUCGCCGGg -3'
miRNA:   3'- -CCGcCGCCGug-----CUAGCGCG--AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 7122 0.72 0.184158
Target:  5'- cGGauuGGCGGCGCGAaacgugucgacgaUCGUGCgCGCCGu -3'
miRNA:   3'- -CCg--CCGCCGUGCU-------------AGCGCGaGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 32373 0.72 0.18951
Target:  5'- aGGCGuCGGCGCGAUCGaaCGCUUcgagAUCGAu -3'
miRNA:   3'- -CCGCcGCCGUGCUAGC--GCGAG----UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11344 0.72 0.19149
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
16992 5' -60.4 NC_004333.2 + 42845 0.72 0.193488
Target:  5'- cGGCGGCGugacgauccaGCGCGAagGCGCgaaagacccgaaCGCCGAg -3'
miRNA:   3'- -CCGCCGC----------CGUGCUagCGCGa-----------GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 39330 0.72 0.194494
Target:  5'- cGGCGGCGGCGCGcuucuaCGaCGCaccgcaggcauUCAUCGAc -3'
miRNA:   3'- -CCGCCGCCGUGCua----GC-GCG-----------AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 47990 0.72 0.194494
Target:  5'- cGGCGG-GcGCACGGgcaguggacUCGCGCcaggCGCCGAu -3'
miRNA:   3'- -CCGCCgC-CGUGCU---------AGCGCGa---GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 25304 0.71 0.199592
Target:  5'- aGCGcCaGUACGAUCGCGCcgaUCGCCGGg -3'
miRNA:   3'- cCGCcGcCGUGCUAGCGCG---AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 22283 0.71 0.204806
Target:  5'- gGGCGGCGaaGCGCGGcgcuUgGCGCUCGCg-- -3'
miRNA:   3'- -CCGCCGC--CGUGCU----AgCGCGAGUGgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.