miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 9191 0.68 0.312556
Target:  5'- cGCGaCGGCAguguCGAUCGCGgugcgCACCGAc -3'
miRNA:   3'- cCGCcGCCGU----GCUAGCGCga---GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 9608 0.67 0.368028
Target:  5'- cGCGGCaucGGC-CGGUUGCGC--ACCGGc -3'
miRNA:   3'- cCGCCG---CCGuGCUAGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 9880 0.77 0.084428
Target:  5'- cGCcGCGuGCACGGUCGCGCgugCAUCGAu -3'
miRNA:   3'- cCGcCGC-CGUGCUAGCGCGa--GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 9930 0.69 0.29363
Target:  5'- gGGCGuGCaucacguugacgaacGGCGCGG-CGCGCUUGCuCGAc -3'
miRNA:   3'- -CCGC-CG---------------CCGUGCUaGCGCGAGUG-GCU- -5'
16992 5' -60.4 NC_004333.2 + 10296 0.7 0.238614
Target:  5'- cGCGaGCaGGC-CGAa-GCGCUCACCGGc -3'
miRNA:   3'- cCGC-CG-CCGuGCUagCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 10550 0.66 0.452472
Target:  5'- -cCGGCGGgAUG-UCGCGCgugacaucaugcagCACCGGc -3'
miRNA:   3'- ccGCCGCCgUGCuAGCGCGa-------------GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 10646 0.73 0.145576
Target:  5'- uGGCGGCGaagaaaggugacGuCACGGUCGCGCcgGCCGGu -3'
miRNA:   3'- -CCGCCGC------------C-GUGCUAGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11106 0.74 0.123548
Target:  5'- cGCGacgaacaGCGGCACGAaaUCGC-CUCGCCGGg -3'
miRNA:   3'- cCGC-------CGCCGUGCU--AGCGcGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11344 0.72 0.19149
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
16992 5' -60.4 NC_004333.2 + 11714 0.67 0.40085
Target:  5'- gGGCGGCGuGCugGcGUCcuGCGCgauguccggcaGCCGAc -3'
miRNA:   3'- -CCGCCGC-CGugC-UAG--CGCGag---------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11816 0.7 0.26366
Target:  5'- cGCGGCcaucaGCGCGAcggCGCGCUCcagcuugcGCCGGu -3'
miRNA:   3'- cCGCCGc----CGUGCUa--GCGCGAG--------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11925 0.67 0.385071
Target:  5'- aGCGGCGcGCGCGccauuacgCGCGCUCcaGgCGGu -3'
miRNA:   3'- cCGCCGC-CGUGCua------GCGCGAG--UgGCU- -5'
16992 5' -60.4 NC_004333.2 + 12225 0.66 0.429895
Target:  5'- -aCGGCuugaauGCGCaGAUCGCGCUCAUgaCGAc -3'
miRNA:   3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5'
16992 5' -60.4 NC_004333.2 + 12287 0.67 0.393787
Target:  5'- cGGCaccGGCGGCGCGcAUUGCgGCguccugcgCGCCa- -3'
miRNA:   3'- -CCG---CCGCCGUGC-UAGCG-CGa-------GUGGcu -5'
16992 5' -60.4 NC_004333.2 + 13365 0.66 0.417946
Target:  5'- gGGC-GCGGCACGAgcggCGUGUccaugaucuggucgUCGCCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUa---GCGCG--------------AGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 13910 0.69 0.269582
Target:  5'- cGCGGCGGCugccgugGCGAUCGUgGC-CGCUGc -3'
miRNA:   3'- cCGCCGCCG-------UGCUAGCG-CGaGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 13970 0.77 0.073485
Target:  5'- aGGCGGCGGC-CGGUgCGCGCgagCugCGc -3'
miRNA:   3'- -CCGCCGCCGuGCUA-GCGCGa--GugGCu -5'
16992 5' -60.4 NC_004333.2 + 14269 0.68 0.35151
Target:  5'- aGCGGCGGCACGccuUCGag--CAUCGGg -3'
miRNA:   3'- cCGCCGCCGUGCu--AGCgcgaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 14362 0.67 0.385071
Target:  5'- -aCGGCGGCAUGuUUGCGCUuCAggUCGGc -3'
miRNA:   3'- ccGCCGCCGUGCuAGCGCGA-GU--GGCU- -5'
16992 5' -60.4 NC_004333.2 + 14888 0.68 0.327734
Target:  5'- uGCGGCcgacGCaACGcgCGCGCUCgGCUGAa -3'
miRNA:   3'- cCGCCGc---CG-UGCuaGCGCGAG-UGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.