miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 372 0.69 0.305169
Target:  5'- aGGCGGCGcgcuGCACGAUCa-GC-CugCGAu -3'
miRNA:   3'- -CCGCCGC----CGUGCUAGcgCGaGugGCU- -5'
16992 5' -60.4 NC_004333.2 + 691 0.73 0.149513
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 981 0.66 0.433612
Target:  5'- cGCGGCGacuugugccucugcuGCGCGGcagCGCGUUCuuCCGGc -3'
miRNA:   3'- cCGCCGC---------------CGUGCUa--GCGCGAGu-GGCU- -5'
16992 5' -60.4 NC_004333.2 + 1094 0.74 0.127278
Target:  5'- cGGa-GCGGCGCGAaagaUCGCGCUCACg-- -3'
miRNA:   3'- -CCgcCGCCGUGCU----AGCGCGAGUGgcu -5'
16992 5' -60.4 NC_004333.2 + 1372 0.71 0.222856
Target:  5'- cGGCGGCGGCcuugaacgaacgcAUGAagcCGCGCUUguacucauaccgcuuGCCGAc -3'
miRNA:   3'- -CCGCCGCCG-------------UGCUa--GCGCGAG---------------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 2635 0.66 0.420685
Target:  5'- cGC-GCGGUuc-AUCGCGCUUGCCGGc -3'
miRNA:   3'- cCGcCGCCGugcUAGCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 3123 0.67 0.368028
Target:  5'- cGCGGCcGCGCGGUguucagcguuugCGCGC-CGCCa- -3'
miRNA:   3'- cCGCCGcCGUGCUA------------GCGCGaGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 3311 0.71 0.217803
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
16992 5' -60.4 NC_004333.2 + 3573 0.68 0.327734
Target:  5'- cGCGGCGGCAgCGGUacgGUGUUuucccacaCGCCGAc -3'
miRNA:   3'- cCGCCGCCGU-GCUAg--CGCGA--------GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 4724 0.67 0.375633
Target:  5'- uGCGGCGcgcaagcGCGCGAUgCGCGCguccgUCAgcCCGAc -3'
miRNA:   3'- cCGCCGC-------CGUGCUA-GCGCG-----AGU--GGCU- -5'
16992 5' -60.4 NC_004333.2 + 5044 0.66 0.420685
Target:  5'- aGGCGGcCGGCuguuggcCGAcgUCgGCGCggCGCUGAa -3'
miRNA:   3'- -CCGCC-GCCGu------GCU--AG-CGCGa-GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 6858 0.67 0.376485
Target:  5'- cGGCGGCuGCGCacugcAUUGCGCagcCAUCGAg -3'
miRNA:   3'- -CCGCCGcCGUGc----UAGCGCGa--GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 7122 0.72 0.184158
Target:  5'- cGGauuGGCGGCGCGAaacgugucgacgaUCGUGCgCGCCGu -3'
miRNA:   3'- -CCg--CCGCCGUGCU-------------AGCGCGaGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 7482 0.68 0.343451
Target:  5'- cGCGGCgaucgGGUugguguucuuuGCGGUCGCGagugCGCCGAa -3'
miRNA:   3'- cCGCCG-----CCG-----------UGCUAGCGCga--GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 7847 0.67 0.368028
Target:  5'- cGCGGCcuGCGcCGGccauuuccagcUCGCGCUCGCCc- -3'
miRNA:   3'- cCGCCGc-CGU-GCU-----------AGCGCGAGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 8304 0.69 0.276964
Target:  5'- aGGCGGCGcGCGgGGcUCGCGCccCGCUa- -3'
miRNA:   3'- -CCGCCGC-CGUgCU-AGCGCGa-GUGGcu -5'
16992 5' -60.4 NC_004333.2 + 8550 0.68 0.335525
Target:  5'- cGGCaugccCGGCugGAUCGUGUU-GCCGAa -3'
miRNA:   3'- -CCGcc---GCCGugCUAGCGCGAgUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 8872 0.69 0.305169
Target:  5'- cGGCuGCGGCGCGGUUaGCcGCgCACCu- -3'
miRNA:   3'- -CCGcCGCCGUGCUAG-CG-CGaGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 9007 0.71 0.2096
Target:  5'- cGGCGuucGCGGCuugccagGCGG-CGCGCUCGCUGc -3'
miRNA:   3'- -CCGC---CGCCG-------UGCUaGCGCGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 9109 0.68 0.320077
Target:  5'- -aCGGC-GCACGAgUCGCGCguacUCGCCGu -3'
miRNA:   3'- ccGCCGcCGUGCU-AGCGCG----AGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.